Variant report

Variant	rs10111821
Chromosome Location	chr8:49620939-49620940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10090157	0.89[ASN][1000 genomes]
rs10090819	0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10092718	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10097910	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10101066	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1126259	0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11785748	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12155607	0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[MEX][hapmap];0.98[ASN][1000 genomes]
rs12542203	0.86[ASN][1000 genomes]
rs12547015	0.87[ASN][1000 genomes]
rs12547603	0.86[ASN][1000 genomes]
rs12547619	0.87[ASN][1000 genomes]
rs12548278	0.83[JPT][hapmap]
rs13271216	0.84[ASN][1000 genomes]
rs13276316	0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[ASN][1000 genomes]
rs13278011	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs1482261	0.84[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2384970	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2891648	0.84[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs35243529	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4873083	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs4873084	0.90[ASN][1000 genomes]
rs4873285	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4873287	0.85[ASN][1000 genomes]
rs4873288	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55923266	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6984858	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6990865	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7835152	0.89[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs900238	0.85[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9298058	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs966703	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49605800-49621200	Enhancers	HMEC	breast
4	chr8:49609200-49621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:49612800-49626400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:49616200-49622400	Enhancers	Esophagus	oesophagus
7	chr8:49617200-49622400	Enhancers	Fetal Heart	heart
8	chr8:49617600-49621200	Weak transcription	Brain Germinal Matrix	brain
9	chr8:49617600-49621800	Enhancers	Right Ventricle	heart
10	chr8:49617800-49621000	Enhancers	NHEK	skin
11	chr8:49617800-49621600	Enhancers	Left Ventricle	heart
12	chr8:49618000-49626000	Weak transcription	Fetal Kidney	kidney
13	chr8:49618200-49621200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:49618200-49621800	Enhancers	Right Atrium	heart
15	chr8:49618200-49628000	Weak transcription	Fetal Lung	lung
16	chr8:49619000-49621200	Weak transcription	Placenta	Placenta
17	chr8:49619000-49626200	Weak transcription	Spleen	Spleen
18	chr8:49619800-49621000	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:49619800-49621000	Weak transcription	Fetal Thymus	thymus
20	chr8:49619800-49621200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr8:49620000-49621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:49620200-49621000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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