Variant report

Variant	rs4873285
Chromosome Location	chr8:49620059-49620060
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49618546..49620489-chr8:49623157..49625539,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10090157	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10090819	0.85[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10092718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10097910	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10101066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10111821	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1074382	0.81[JPT][hapmap]
rs10808720	0.81[JPT][hapmap]
rs1126259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11785748	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155607	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12542203	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12547015	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12547603	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12547619	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12548278	0.89[JPT][hapmap]
rs13251991	0.81[JPT][hapmap]
rs13271216	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13276316	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1482261	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1482262	0.80[JPT][hapmap]
rs1871889	0.81[JPT][hapmap]
rs2384970	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2891648	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs35243529	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873084	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873287	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4873288	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55923266	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6984858	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6990865	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7835152	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs900237	0.80[JPT][hapmap]
rs900238	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9298058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs966703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49605800-49621200	Enhancers	HMEC	breast
4	chr8:49609200-49621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:49612800-49626400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:49616200-49622400	Enhancers	Esophagus	oesophagus
7	chr8:49617200-49622400	Enhancers	Fetal Heart	heart
8	chr8:49617600-49621200	Weak transcription	Brain Germinal Matrix	brain
9	chr8:49617600-49621800	Enhancers	Right Ventricle	heart
10	chr8:49617800-49621000	Enhancers	NHEK	skin
11	chr8:49617800-49621600	Enhancers	Left Ventricle	heart
12	chr8:49618000-49626000	Weak transcription	Fetal Kidney	kidney
13	chr8:49618200-49621200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:49618200-49621800	Enhancers	Right Atrium	heart
15	chr8:49618200-49628000	Weak transcription	Fetal Lung	lung
16	chr8:49618600-49620200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:49619000-49621200	Weak transcription	Placenta	Placenta
18	chr8:49619000-49626200	Weak transcription	Spleen	Spleen
19	chr8:49619200-49620600	Bivalent Enhancer	Fetal Stomach	stomach
20	chr8:49619400-49620400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
21	chr8:49619600-49620200	Enhancers	Fetal Muscle Trunk	muscle
22	chr8:49619800-49620200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:49619800-49621000	Weak transcription	Fetal Muscle Leg	muscle
24	chr8:49619800-49621000	Weak transcription	Fetal Thymus	thymus
25	chr8:49619800-49621200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr8:49620000-49621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links