Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10090819	0.85[CHB][hapmap]
rs10101066	0.81[JPT][hapmap]
rs1074382	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs10808720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs10957199	0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1126259	0.80[JPT][hapmap]
rs12548278	0.86[CEU][hapmap];0.80[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13251991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13276316	0.85[CHB][hapmap]
rs1482261	0.85[CHB][hapmap];0.80[JPT][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1482262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16938731	0.85[AFR][1000 genomes]
rs2891648	0.85[CHB][hapmap];0.80[JPT][hapmap];0.83[AFR][1000 genomes]
rs4873285	0.81[JPT][hapmap]
rs4873286	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4873288	0.81[JPT][hapmap]
rs4873289	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6415598	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7835152	0.85[CHB][hapmap]
rs900237	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs900238	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs9298058	0.81[JPT][hapmap]
rs9332436	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs966703	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3323191	chr8:49636899-49641497	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1871889	EFCAB1	cis	Nerve Tibial	GTEx
rs1871889	EFCAB1	cis	Skin Sun Exposed Lower leg	GTEx
rs1871889	EFCAB1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49627000-49647200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:49627800-49647400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:49633200-49647200	Weak transcription	Ovary	ovary
4	chr8:49639800-49647000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:49640000-49642000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:49640200-49641200	Strong transcription	Fetal Lung	lung

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