Variant report

Variant	rs10957199
Chromosome Location	chr8:49607428-49607429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49607319..49609112-chr8:49621401..49624226,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10090819	0.81[CHB][hapmap]
rs1074382	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10808720	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13251991	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13276316	0.81[CHB][hapmap]
rs1482261	0.81[CHB][hapmap]
rs1482262	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1871889	0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2891648	0.81[CHB][hapmap]
rs3750259	1.00[YRI][hapmap]
rs4873286	0.85[ASN][1000 genomes]
rs4873289	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7835152	0.81[CHB][hapmap]
rs900237	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs900238	0.81[CHB][hapmap]
rs9332436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49595800-49607600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:49595800-49616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49600800-49607600	Weak transcription	Lung	lung
4	chr8:49603200-49608800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:49604200-49611400	Weak transcription	Fetal Brain Female	brain
6	chr8:49604600-49608600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:49604800-49608200	Weak transcription	HSMM	muscle
8	chr8:49605600-49612000	Enhancers	NHEK	skin
9	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:49605800-49611800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:49605800-49621200	Enhancers	HMEC	breast
13	chr8:49606600-49607600	Weak transcription	Esophagus	oesophagus
14	chr8:49606600-49607800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:49606600-49612000	Weak transcription	Pancreas	Pancrea
16	chr8:49606600-49612200	Weak transcription	Left Ventricle	heart
17	chr8:49607000-49608000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr8:49607000-49608000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr8:49607000-49608400	Weak transcription	Fetal Lung	lung
20	chr8:49607000-49608400	Weak transcription	Fetal Thymus	thymus
21	chr8:49607000-49609200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr8:49607200-49607600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:49607200-49607600	Enhancers	Adipose Nuclei	Adipose
24	chr8:49607200-49611200	Weak transcription	Brain Germinal Matrix	brain

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