Variant report

Variant	rs10097910
Chromosome Location	chr8:49606500-49606501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49600290..49603183-chr8:49605826..49607351,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10086031	0.85[CEU][hapmap]
rs10086847	0.85[CEU][hapmap]
rs10089017	0.84[CEU][hapmap]
rs10090157	0.86[ASN][1000 genomes]
rs10090819	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10092718	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs10094884	0.85[CEU][hapmap]
rs10098811	0.85[CEU][hapmap]
rs10101066	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10107998	0.85[CEU][hapmap]
rs10111821	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10504066	0.85[CEU][hapmap]
rs1126259	1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.92[ASN][1000 genomes]
rs11785748	0.93[ASN][1000 genomes]
rs11994273	0.85[CEU][hapmap]
rs12155607	1.00[CHB][hapmap];0.86[CHD][hapmap];0.93[ASN][1000 genomes]
rs12542203	0.82[ASN][1000 genomes]
rs12547015	0.84[ASN][1000 genomes]
rs12547603	0.82[ASN][1000 genomes]
rs12547619	0.83[ASN][1000 genomes]
rs12548278	0.83[JPT][hapmap]
rs12549717	0.85[CEU][hapmap]
rs13248205	0.85[CEU][hapmap]
rs13251674	0.85[CEU][hapmap]
rs13271216	0.81[ASN][1000 genomes]
rs13275840	0.85[CEU][hapmap]
rs13276316	0.85[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13278011	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[MKK][hapmap]
rs13439150	0.85[CEU][hapmap]
rs1482261	0.85[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs1482264	0.85[CEU][hapmap]
rs16938259	0.85[CEU][hapmap]
rs16938260	0.85[CEU][hapmap]
rs16938290	0.85[CEU][hapmap]
rs2046236	0.91[CEU][hapmap]
rs2170491	0.85[CEU][hapmap]
rs2384970	0.90[ASN][1000 genomes]
rs2891648	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs35243529	0.90[ASN][1000 genomes]
rs4873083	0.91[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs4873084	0.95[ASN][1000 genomes]
rs4873281	0.85[CEU][hapmap]
rs4873283	0.85[CEU][hapmap]
rs4873284	0.85[CEU][hapmap]
rs4873285	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4873287	0.82[ASN][1000 genomes]
rs4873288	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs55923266	0.90[ASN][1000 genomes]
rs6984858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6988001	0.85[CEU][hapmap]
rs6989273	0.85[CEU][hapmap]
rs6990865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7835152	0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs900238	0.85[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs9298058	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs966703	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10097910	C8orf22	cis	cerebellum	SCAN
rs10097910	EFCAB1	cis	parietal	SCAN
rs10097910	EFCAB1	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49595800-49607600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:49595800-49616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49600800-49607600	Weak transcription	Lung	lung
4	chr8:49603200-49608800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:49604200-49611400	Weak transcription	Fetal Brain Female	brain
6	chr8:49604600-49608600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:49604800-49608200	Weak transcription	HSMM	muscle
8	chr8:49605600-49607200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:49605600-49612000	Enhancers	NHEK	skin
10	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:49605800-49611800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:49605800-49621200	Enhancers	HMEC	breast
14	chr8:49606000-49606600	Enhancers	Esophagus	oesophagus
15	chr8:49606000-49606600	Enhancers	Pancreas	Pancrea
16	chr8:49606400-49606600	Enhancers	Fetal Muscle Trunk	muscle
17	chr8:49606400-49606600	Enhancers	Left Ventricle	heart
18	chr8:49606400-49607000	Enhancers	Fetal Lung	lung
19	chr8:49606400-49607000	Enhancers	Fetal Thymus	thymus
20	chr8:49606400-49607400	Enhancers	Fetal Stomach	stomach

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