Variant report

Variant	rs4873281
Chromosome Location	chr8:49544392-49544393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49541767..49544762-chr8:49827612..49829547,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10086031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10086847	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10089017	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10094884	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10097910	0.85[CEU][hapmap]
rs10098811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10107998	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10429408	0.88[AMR][1000 genomes]
rs10504066	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10957191	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11992055	0.88[AMR][1000 genomes]
rs11994273	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12549717	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13248205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13251674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13257444	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13275840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13278011	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13439150	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1482264	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16938259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16938260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16938290	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16938363	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2046236	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2170491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28496614	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33997479	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34036465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35116039	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35306055	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35379802	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35545096	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35564937	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36071901	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4873282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873283	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988001	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6989273	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71511941	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs745488	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49537600-49547000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr8:49538400-49545800	Weak transcription	Fetal Stomach	stomach
4	chr8:49538600-49546200	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:49539000-49546000	Weak transcription	Fetal Kidney	kidney
6	chr8:49540400-49545800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:49542600-49544400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:49542800-49544400	Enhancers	Osteobl	bone
9	chr8:49543200-49546000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:49543200-49546000	Weak transcription	Placenta	Placenta
11	chr8:49543200-49548000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:49543200-49548400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:49543400-49548000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:49543600-49548200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:49544200-49545800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:49544200-49545800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:49544200-49548200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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