Variant report

Variant	rs34036465
Chromosome Location	chr8:49541650-49541651
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49533480..49535514-chr8:49539085..49541873,2	MCF-7	breast:
2	chr8:49539159..49543167-chr8:49831897..49834584,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction
ENSG00000253702	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10086031	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10086847	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10089017	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10094884	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10098811	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10107998	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10429408	0.88[AMR][1000 genomes]
rs10504066	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10957191	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11992055	0.88[AMR][1000 genomes]
rs11994273	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12549717	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13248205	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13251674	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13257444	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13275840	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13278011	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13439150	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1482264	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16938259	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16938260	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16938290	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16938363	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2046236	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2170491	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28496614	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33997479	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35116039	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35306055	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35379802	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35545096	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35564937	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36071901	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4873281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873283	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4873284	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6988001	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6989273	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71511941	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs745488	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49534600-49543000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:49537400-49541800	Enhancers	Placenta	Placenta
4	chr8:49537600-49547000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr8:49537800-49542400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:49538400-49545800	Weak transcription	Fetal Stomach	stomach
7	chr8:49538600-49541800	Enhancers	HUVEC	blood vessel
8	chr8:49538600-49546200	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:49538800-49544000	Enhancers	HMEC	breast
10	chr8:49539000-49543200	Enhancers	A549	lung
11	chr8:49539000-49543600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:49539000-49546000	Weak transcription	Fetal Kidney	kidney
13	chr8:49539200-49544200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:49539200-49544200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:49539600-49544000	Enhancers	NHEK	skin
16	chr8:49539800-49541800	Enhancers	Osteobl	bone
17	chr8:49539800-49544200	Enhancers	NH-A	brain
18	chr8:49540000-49543000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:49540000-49543600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:49540200-49542600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:49540200-49543000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:49540400-49542600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:49540400-49542800	Weak transcription	NHDF-Ad	bronchial
24	chr8:49540400-49543000	Weak transcription	NHLF	lung
25	chr8:49540400-49543200	Enhancers	Hela-S3	cervix
26	chr8:49540400-49545800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr8:49540800-49541800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:49541000-49541800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr8:49541200-49541800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:49541200-49541800	Enhancers	HSMM	muscle
31	chr8:49541600-49541800	Enhancers	Gastric	stomach
32	chr8:49541600-49543000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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