Variant report

Variant	rs28496614
Chromosome Location	chr8:49550534-49550535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:49547940..49550013-chr8:49550346..49553182,2	K562	blood:
2	chr8:49319707..49321883-chr8:49548492..49551436,2	MCF-7	breast:
3	chr8:49518230..49520037-chr8:49547889..49550739,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10086031	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10086847	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10089017	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10094884	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10098811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107998	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10429408	0.88[AMR][1000 genomes]
rs10504066	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10957191	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11992055	0.88[AMR][1000 genomes]
rs11994273	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12549717	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13248205	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13251674	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13257444	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13275840	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13278011	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13439150	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1482264	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16938259	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16938260	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16938290	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16938363	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2046236	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2170491	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33997479	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34036465	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35116039	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35306055	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35379802	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35545096	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35564937	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36071901	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873281	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873282	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873283	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873284	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988001	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6989273	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71511941	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs745488	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49544400-49555400	Weak transcription	Osteobl	bone
3	chr8:49546600-49554400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49547200-49551200	Weak transcription	Ovary	ovary
5	chr8:49547400-49553400	Weak transcription	Fetal Lung	lung
6	chr8:49548400-49551200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:49548600-49551400	Enhancers	HMEC	breast
8	chr8:49548800-49550800	Enhancers	NHEK	skin
9	chr8:49549000-49550800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:49549400-49553400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:49550200-49555800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:49550400-49552000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:49550400-49552800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:49550400-49552800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:49550400-49554200	Weak transcription	Placenta	Placenta
16	chr8:49550400-49556000	Weak transcription	NH-A	brain

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