Variant report

Variant	rs12549717
Chromosome Location	chr8:49581602-49581603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49577351..49578881-chr8:49579398..49582308,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10086031	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10086847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10089017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10094884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097910	0.85[CEU][hapmap]
rs10098811	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10107998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10429408	0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes]
rs10504066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10957191	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11992055	0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes]
rs11994273	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13248205	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13251674	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13257444	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13275840	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13278011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439150	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1482264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16938259	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16938260	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16938290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16938363	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2170491	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28496614	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs33997479	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34036465	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35116039	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35306055	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35379802	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35545096	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35564937	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36071901	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873281	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4873282	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4873283	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4873284	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6988001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71511941	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs745488	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49570000-49584000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49573400-49586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49580200-49586600	Enhancers	Fetal Lung	lung
4	chr8:49581200-49587800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:49581400-49581800	Enhancers	Fetal Stomach	stomach
6	chr8:49581600-49582800	Weak transcription	Ovary	ovary
7	chr8:49581600-49584000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:49581600-49584200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr8:49581600-49584400	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links