Variant report

Variant	rs10504066
Chromosome Location	chr8:49564036-49564037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10086031	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10086847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10089017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10094884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10097910	0.85[CEU][hapmap]
rs10098811	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10107998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10429408	0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes]
rs10957191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11992055	0.85[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes]
rs11994273	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12549717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13248205	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13251674	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13257444	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13275840	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13278011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13439150	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1482264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16938259	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16938260	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16938290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16938363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2046236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2170491	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28496614	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs33997479	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34036465	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35116039	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35306055	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35379802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35545096	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35564937	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36071901	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4873281	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873282	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873283	1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873284	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6988001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6989273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71511941	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs745488	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49556600-49565600	Weak transcription	NH-A	brain
2	chr8:49557600-49566000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr8:49558000-49564600	Enhancers	Fetal Lung	lung
4	chr8:49558200-49564400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:49559200-49565600	Weak transcription	Gastric	stomach
6	chr8:49559400-49564400	Enhancers	HSMM	muscle
7	chr8:49560000-49566400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:49560200-49564400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:49560600-49567600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:49560800-49564400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:49560800-49564800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:49561000-49565600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr8:49561000-49567600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:49561000-49567600	Enhancers	Osteobl	bone
15	chr8:49561200-49564600	Enhancers	Liver	Liver
16	chr8:49561400-49567000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:49561600-49564200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:49561800-49564200	Enhancers	Adipose Nuclei	Adipose
19	chr8:49561800-49564200	Enhancers	NHDF-Ad	bronchial
20	chr8:49561800-49564400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:49562000-49564200	Enhancers	NHLF	lung
22	chr8:49562600-49566400	Weak transcription	Fetal Kidney	kidney
23	chr8:49562800-49564200	Weak transcription	Aorta	Aorta
24	chr8:49562800-49565400	Weak transcription	Fetal Brain Male	brain
25	chr8:49563000-49565400	Weak transcription	Fetal Thymus	thymus
26	chr8:49563000-49565600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:49563000-49569400	Weak transcription	Spleen	Spleen
28	chr8:49563200-49565400	Weak transcription	Fetal Stomach	stomach
29	chr8:49563200-49565400	Weak transcription	HSMMtube	muscle
30	chr8:49563200-49565600	Weak transcription	Left Ventricle	heart
31	chr8:49563200-49566400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr8:49563200-49566400	Weak transcription	Placenta	Placenta
33	chr8:49563200-49566600	Weak transcription	Right Atrium	heart
34	chr8:49563200-49566600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr8:49563200-49572800	Weak transcription	Pancreas	Pancrea
36	chr8:49563600-49564400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr8:49563800-49564200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr8:49563800-49564200	Enhancers	A549	lung
39	chr8:49563800-49564400	Enhancers	Colon Smooth Muscle	Colon
40	chr8:49563800-49565600	Enhancers	Fetal Muscle Leg	muscle
41	chr8:49563800-49566800	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr8:49563800-49567000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr8:49563800-49567800	Enhancers	Ovary	ovary
44	chr8:49564000-49564200	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr8:49564000-49564200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr8:49564000-49565200	Enhancers	Lung	lung
47	chr8:49564000-49565400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:49564000-49565600	Enhancers	Fetal Muscle Trunk	muscle
49	chr8:49564000-49567400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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