Variant report

Variant	rs71511941
Chromosome Location	chr8:49559282-49559283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49554509..49556220-chr8:49558044..49560777,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10086031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10086847	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10089017	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10094884	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10098811	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10107998	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10429408	0.89[AMR][1000 genomes]
rs10504066	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10957191	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11992055	0.89[AMR][1000 genomes]
rs11994273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12549717	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13248205	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13251674	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13257444	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13275840	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13278011	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13439150	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1482264	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16938259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938363	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2046236	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2170491	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28496614	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs33997479	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34036465	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35116039	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35306055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35379802	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35545096	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35564937	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36071901	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873281	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4873282	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4873283	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4873284	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6988001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6989273	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs745488	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49551200-49560800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:49551200-49563400	Enhancers	Ovary	ovary
3	chr8:49553000-49560000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:49556400-49559400	Weak transcription	Fetal Kidney	kidney
5	chr8:49556600-49560600	Weak transcription	Aorta	Aorta
6	chr8:49556600-49561000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:49556600-49562600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:49556600-49565600	Weak transcription	NH-A	brain
9	chr8:49556800-49559600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:49556800-49560200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:49556800-49560600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:49556800-49560800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:49556800-49560800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:49556800-49561000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:49556800-49561000	Weak transcription	Osteobl	bone
16	chr8:49556800-49561200	Weak transcription	Liver	Liver
17	chr8:49556800-49561800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:49557000-49560600	Weak transcription	Pancreas	Pancrea
19	chr8:49557000-49561800	Weak transcription	Adipose Nuclei	Adipose
20	chr8:49557000-49562000	Weak transcription	Spleen	Spleen
21	chr8:49557600-49560800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:49557600-49561200	Enhancers	Right Atrium	heart
23	chr8:49557600-49566000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr8:49557800-49559600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:49557800-49562800	Enhancers	Fetal Brain Male	brain
26	chr8:49558000-49560200	Enhancers	Fetal Heart	heart
27	chr8:49558000-49563400	Enhancers	Fetal Muscle Trunk	muscle
28	chr8:49558000-49563400	Enhancers	Fetal Muscle Leg	muscle
29	chr8:49558000-49564600	Enhancers	Fetal Lung	lung
30	chr8:49558200-49560000	Enhancers	Fetal Thymus	thymus
31	chr8:49558200-49563200	Enhancers	Placenta	Placenta
32	chr8:49558200-49563200	Enhancers	Fetal Stomach	stomach
33	chr8:49558200-49564400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:49558400-49562000	Weak transcription	Lung	lung
35	chr8:49558600-49559800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:49558600-49559800	Weak transcription	Esophagus	oesophagus
37	chr8:49558600-49560800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr8:49558600-49562800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr8:49559000-49559400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:49559000-49559400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr8:49559000-49559400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:49559000-49559400	Weak transcription	Left Ventricle	heart
43	chr8:49559000-49559400	Flanking Active TSS	HSMM	muscle
44	chr8:49559000-49559400	Active TSS	NHDF-Ad	bronchial
45	chr8:49559000-49559400	Enhancers	NHLF	lung
46	chr8:49559000-49559600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr8:49559000-49559800	Enhancers	Fetal Brain Female	brain
48	chr8:49559200-49559400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr8:49559200-49559400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
50	chr8:49559200-49559800	Enhancers	Stomach Mucosa	stomach

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