Variant report

Variant	rs10086847
Chromosome Location	chr8:49566294-49566295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49565766..49568245-chr8:49569048..49571269,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10086031	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10089017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10097910	0.85[CEU][hapmap]
rs10098811	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10107998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10429408	0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes]
rs10504066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10957191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992055	0.85[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes]
rs11994273	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12549717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13248205	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13251674	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13257444	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13275840	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13278011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13439150	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1482264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16938259	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16938260	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16938290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16938363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2046236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2170491	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28496614	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs33997479	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34036465	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35116039	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35306055	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35379802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35545096	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35564937	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36071901	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873281	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873282	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873283	1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873284	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6988001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6989273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71511941	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs745488	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49560000-49566400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:49560600-49567600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:49561000-49567600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:49561000-49567600	Enhancers	Osteobl	bone
5	chr8:49561400-49567000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:49562600-49566400	Weak transcription	Fetal Kidney	kidney
7	chr8:49563000-49569400	Weak transcription	Spleen	Spleen
8	chr8:49563200-49566400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:49563200-49566400	Weak transcription	Placenta	Placenta
10	chr8:49563200-49566600	Weak transcription	Right Atrium	heart
11	chr8:49563200-49566600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:49563200-49572800	Weak transcription	Pancreas	Pancrea
13	chr8:49563800-49566800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:49563800-49567000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr8:49563800-49567800	Enhancers	Ovary	ovary
16	chr8:49564000-49567400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:49564200-49566600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:49564400-49566800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:49564400-49571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:49564800-49566600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:49564800-49567600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:49565000-49570200	Weak transcription	Aorta	Aorta
23	chr8:49565200-49566800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr8:49565400-49566600	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr8:49565400-49566600	Enhancers	Fetal Thymus	thymus
26	chr8:49565400-49567400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:49565400-49567600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:49565400-49567600	Enhancers	Fetal Stomach	stomach
29	chr8:49565400-49567600	Enhancers	HSMM	muscle
30	chr8:49565400-49567600	Enhancers	HSMMtube	muscle
31	chr8:49565400-49567600	Enhancers	NHDF-Ad	bronchial
32	chr8:49565400-49567600	Enhancers	NHLF	lung
33	chr8:49565600-49566400	Enhancers	Duodenum Mucosa	Duodenum
34	chr8:49565600-49566600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr8:49565600-49567600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:49565800-49566600	Weak transcription	Lung	lung
37	chr8:49565800-49568800	Weak transcription	Left Ventricle	heart
38	chr8:49566000-49566600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr8:49566000-49567000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:49566000-49568200	Enhancers	Fetal Lung	lung
41	chr8:49566200-49567200	Enhancers	Placenta Amnion	Placenta Amnion
42	chr8:49566200-49567200	Enhancers	NH-A	brain
43	chr8:49566200-49567600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr8:49566200-49567600	Enhancers	Fetal Muscle Leg	muscle

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