Variant report

Variant	rs13439150
Chromosome Location	chr8:49588729-49588730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10086031	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10086847	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10089017	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10094884	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10097910	0.85[CEU][hapmap]
rs10098811	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10107998	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10429408	0.90[JPT][hapmap];0.86[AMR][1000 genomes]
rs10504066	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957191	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11992055	0.89[JPT][hapmap];0.86[AMR][1000 genomes]
rs11994273	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12549717	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13248205	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13251674	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13257444	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13275840	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13278011	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1482264	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16938259	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16938260	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16938290	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16938363	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2046236	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2170491	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28496614	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs33997479	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34036465	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35116039	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35306055	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35379802	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35545096	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35564937	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36071901	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4873281	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4873282	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4873283	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4873284	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6988001	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989273	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71511941	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs745488	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49583600-49590000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:49584400-49590000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:49584600-49589600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:49585200-49592000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:49585400-49592000	Weak transcription	Left Ventricle	heart
6	chr8:49586200-49591800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:49586600-49590800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:49586600-49591800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:49586600-49592000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr8:49586800-49592400	Weak transcription	Spleen	Spleen
11	chr8:49587000-49591800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:49587000-49591800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr8:49587000-49592200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:49587200-49591600	Weak transcription	HMEC	breast
15	chr8:49587200-49595400	Weak transcription	Right Atrium	heart
16	chr8:49587800-49590600	Weak transcription	Fetal Intestine Small	intestine
17	chr8:49587800-49591000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr8:49587800-49595200	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:49588000-49595200	Weak transcription	Fetal Stomach	stomach
20	chr8:49588400-49590200	Weak transcription	Fetal Lung	lung
21	chr8:49588400-49590400	Weak transcription	Ovary	ovary
22	chr8:49588400-49592000	Weak transcription	Small Intestine	intestine

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