Variant report

Variant	rs35116039
Chromosome Location	chr8:49544752-49544753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49541767..49544762-chr8:49827612..49829547,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10086031	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10086847	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10089017	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10094884	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10098811	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10107998	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10429408	0.88[AMR][1000 genomes]
rs10504066	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10957191	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11992055	0.88[AMR][1000 genomes]
rs11994273	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12549717	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13248205	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13251674	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13257444	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13275840	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13278011	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13439150	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1482264	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16938259	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16938260	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16938290	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16938363	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2046236	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2170491	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28496614	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33997479	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34036465	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35306055	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35379802	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35545096	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35564937	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36071901	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4873281	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873282	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873283	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873284	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988001	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6989273	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71511941	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs745488	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49537600-49547000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr8:49538400-49545800	Weak transcription	Fetal Stomach	stomach
4	chr8:49538600-49546200	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:49539000-49546000	Weak transcription	Fetal Kidney	kidney
6	chr8:49540400-49545800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:49543200-49546000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:49543200-49546000	Weak transcription	Placenta	Placenta
9	chr8:49543200-49548000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:49543200-49548400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:49543400-49548000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:49543600-49548200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:49544200-49545800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:49544200-49545800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:49544200-49548200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:49544400-49545800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:49544400-49555400	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links