Variant report

Variant	rs4876484
Chromosome Location	chr8:113695607-113695608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1019603	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10505190	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10505191	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10505192	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10505193	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10955632	0.95[CEU][hapmap]
rs10955633	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12114545	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12114638	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12676687	0.90[CEU][hapmap]
rs12676711	0.95[CEU][hapmap]
rs12677225	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12677261	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs12677918	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12679365	0.94[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12682342	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12682563	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs1549351	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1549352	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1549353	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16884004	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16884034	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16884039	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16884044	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16884046	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16884089	0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16884093	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16884096	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1863088	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1991134	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1991135	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2052635	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2113664	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2194597	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4263796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4582593	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4876291	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4876292	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4876293	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4876294	0.90[CEU][hapmap]
rs4876483	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4876487	0.95[CEU][hapmap]
rs4876488	0.95[CEU][hapmap]
rs4876492	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4876493	0.89[CEU][hapmap]
rs56859083	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61498012	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6469435	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6469436	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6469437	0.90[CEU][hapmap]
rs6469438	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6469439	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6469440	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs66817037	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67112531	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67545147	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67594301	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67838088	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68078492	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6986681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6986937	0.95[CEU][hapmap]
rs6993756	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7002262	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7007239	0.95[CEU][hapmap]
rs7820108	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7820337	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7822477	0.90[CEU][hapmap]
rs7823827	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7825786	0.90[CEU][hapmap]
rs7826001	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7826958	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7834987	0.90[CEU][hapmap]
rs7836068	0.95[CEU][hapmap]
rs7837037	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7845849	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9643075	0.90[CEU][hapmap]
rs9649935	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9650048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9650049	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9785080	0.90[CEU][hapmap]
rs9918857	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831427	chr8:113494319-113699264	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv891324	chr8:113647451-113732965	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113687000-113699200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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