Variant report

Variant	rs9650048
Chromosome Location	chr8:113736539-113736540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10105493	0.80[MEX][hapmap]
rs1019603	0.95[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10505169	0.85[MEX][hapmap]
rs10505190	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10505191	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10505192	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10505193	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10955632	0.95[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs10955633	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12114545	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12114638	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12676687	0.90[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs12676711	0.95[CEU][hapmap]
rs12677225	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12677261	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs12677918	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12679365	0.95[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12682342	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12682563	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs1549351	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1549352	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1549353	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16883931	0.85[MEX][hapmap]
rs16884004	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16884034	0.95[CEU][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16884039	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16884044	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16884046	0.90[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16884089	0.89[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16884093	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16884096	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1863088	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1991134	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1991135	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2052635	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2113664	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2194597	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4263796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap]
rs4582593	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4876291	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4876292	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4876293	0.95[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4876294	0.90[CEU][hapmap]
rs4876483	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4876484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4876487	0.95[CEU][hapmap]
rs4876488	0.95[CEU][hapmap]
rs4876492	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4876493	0.89[CEU][hapmap]
rs56859083	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61498012	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6469430	0.85[MEX][hapmap]
rs6469435	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6469436	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6469437	0.90[CEU][hapmap]
rs6469438	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6469439	0.90[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6469440	0.94[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs66817037	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67112531	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67545147	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67594301	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67838088	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68078492	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6986681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6986937	0.95[CEU][hapmap]
rs6993756	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7002262	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7007239	0.95[CEU][hapmap]
rs7820108	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7820337	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7822477	0.90[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs7823827	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7825786	0.90[CEU][hapmap]
rs7826001	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7826958	0.95[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7834987	0.90[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs7836068	0.95[CEU][hapmap]
rs7837037	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7845849	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9643075	0.90[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs9649935	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9650049	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9785080	0.90[CEU][hapmap]
rs9918857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9650048	NUDCD1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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