Variant report

Variant	rs4880171
Chromosome Location	chr9:139843821-139843822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr9:139843675-139845362	HEK293-T-REx	kidney:	n/a	chr9:139843943-139843952 chr9:139844659-139844668 chr9:139844342-139844351
2	POLR2A	chr9:139843713-139843948	HepG2	liver:	n/a	n/a
3	POLR2A	chr9:139843711-139845400	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr9:139843689-139843953	HepG2	liver:	n/a	n/a
5	POLR2A	chr9:139843201-139846381	HepG2	liver:	n/a	n/a
6	REST	chr9:139843744-139845440	H1-neurons	neurons:	n/a	chr9:139844272-139844286 chr9:139844631-139844651 chr9:139844123-139844143 chr9:139844274-139844284 chr9:139845268-139845277 chr9:139844242-139844255 chr9:139844635-139844648
7	SMARCB1	chr9:139843739-139845506	Hela-S3	cervix:	n/a	n/a
8	MYC	chr9:139843771-139844019	MCF-7	breast:	n/a	n/a
9	MAX	chr9:139843531-139845365	A549	lung:	n/a	chr9:139844589-139844602 chr9:139844591-139844600 chr9:139844589-139844602 chr9:139844303-139844313 chr9:139844710-139844719 chr9:139844590-139844601
10	CEBPB	chr9:139843738-139843832	Hela-S3	cervix:	n/a	n/a
11	ZBTB7A	chr9:139843717-139843922	HepG2	liver:	n/a	n/a
12	CREB1	chr9:139843555-139845349	HepG2	liver:	n/a	n/a
13	YY1	chr9:139843672-139843961	HepG2	liver:	n/a	n/a
14	MXI1	chr9:139843774-139843859	HepG2	liver:	n/a	n/a
15	MAX	chr9:139843676-139845471	MCF-7	breast:	n/a	chr9:139844589-139844602 chr9:139845445-139845455 chr9:139844591-139844600 chr9:139844589-139844602 chr9:139844303-139844313 chr9:139844710-139844719 chr9:139844590-139844601
16	POLR2A	chr9:139843716-139843967	A549	lung:	n/a	n/a
17	MAZ	chr9:139843621-139845227	IMR90	lung:	n/a	chr9:139844589-139844602 chr9:139844591-139844600 chr9:139844589-139844602 chr9:139844303-139844313 chr9:139844710-139844719 chr9:139844590-139844601
18	ZBTB7A	chr9:139843755-139843901	K562	blood:	n/a	n/a
19	HDAC2	chr9:139843592-139843948	HepG2	liver:	n/a	n/a
20	HNF4G	chr9:139843644-139843927	HepG2	liver:	n/a	n/a
21	HEY1	chr9:139843694-139843945	HepG2	liver:	n/a	n/a
22	HEY1	chr9:139843556-139843984	HepG2	liver:	n/a	n/a
23	POLR2A	chr9:139843670-139843942	HepG2	liver:	n/a	n/a
24	POLR2A	chr9:139843798-139845657	Raji	blood:	n/a	n/a
25	POLR2A	chr9:139843708-139845100	MCF-7	breast:	n/a	n/a
26	POLR2A	chr9:139843622-139843961	HepG2	liver:	n/a	n/a
27	TCF3	chr9:139843719-139843960	GM12878	blood:	n/a	chr9:139843887-139843896 chr9:139843857-139843867 chr9:139843884-139843899
28	POLR2A	chr9:139843681-139845047	HepG2	liver:	n/a	n/a
29	POLR2A	chr9:139843665-139845422	K562	blood:	n/a	n/a
30	HNF4A	chr9:139843552-139843926	HepG2	liver:	n/a	n/a
31	RCOR1	chr9:139843762-139845644	IMR90	lung:	n/a	n/a
32	CEBPD	chr9:139843601-139843884	HepG2	liver:	n/a	n/a
33	CEBPB	chr9:139843586-139843937	HepG2	liver:	n/a	n/a
34	POLR2A	chr9:139843687-139845546	HepG2	liver:	n/a	n/a
35	CHD2	chr9:139843778-139843925	HepG2	liver:	n/a	n/a
36	CEBPB	chr9:139843716-139843822	A549	lung:	n/a	n/a
37	POLR2A	chr9:139843735-139843954	A549	lung:	n/a	n/a
38	POLR2A	chr9:139843755-139844148	HCT-116	colon:	n/a	n/a
39	TBP	chr9:139843717-139843917	HepG2	liver:	n/a	n/a
40	MAZ	chr9:139843678-139844862	HepG2	liver:	n/a	chr9:139844589-139844602 chr9:139844591-139844600 chr9:139844589-139844602 chr9:139844303-139844313 chr9:139844710-139844719 chr9:139844590-139844601
41	HCFC1	chr9:139843214-139845987	Hela-S3	cervix:	n/a	n/a
42	CEBPB	chr9:139843559-139843876	HepG2	liver:	n/a	n/a
43	ZBTB7A	chr9:139843747-139845258	ECC-1	luminal epithelium:	n/a	n/a
44	POLR2A	chr9:139843731-139843972	MCF-7	breast:	n/a	n/a
45	POLR2A	chr9:139843713-139843945	A549	lung:	n/a	n/a
46	CEBPB	chr9:139843624-139843854	HepG2	liver:	n/a	n/a
47	CEBPB	chr9:139843574-139843929	HepG2	liver:	n/a	n/a
48	SP1	chr9:139843525-139843922	HepG2	liver:	n/a	n/a
49	HNF4A	chr9:139843641-139843888	HepG2	liver:	n/a	n/a
50	POLR2A	chr9:139843723-139843938	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139741884..139743712-chr9:139842627..139845556,4	MCF-7	breast:
2	chr9:139843021..139845836-chr9:139846843..139848545,2	K562	blood:
3	chr9:139842377..139845923-chr9:139939080..139942465,6	MCF-7	breast:
4	chr9:139843096..139845077-chr9:139874419..139875996,2	K562	blood:
5	chr9:139842457..139844690-chr9:139937071..139941106,4	MCF-7	breast:
6	chr9:139841985..139846327-chr9:139875508..139880293,6	MCF-7	breast:
7	chr9:139842911..139846043-chr9:139877462..139880780,4	MCF-7	breast:
8	chr9:139699496..139701680-chr9:139843463..139845874,2	MCF-7	breast:
9	chr9:139843553..139845342-chr9:140116924..140119676,2	MCF-7	breast:
10	chr9:139836105..139846821-chr9:139919094..139924819,24	MCF-7	breast:
11	chr9:139738593..139754524-chr9:139832961..139844322,29	MCF-7	breast:
12	chr9:139836188..139848313-chr9:139883522..139894647,40	MCF-7	breast:
13	chr9:139841239..139844596-chr9:139873847..139876330,3	K562	blood:
14	chr9:139841697..139844143-chr9:139891136..139894230,3	K562	blood:
15	chr9:139842871..139845268-chr9:140134564..140137033,2	K562	blood:
16	chr9:139792836..139799400-chr9:139842261..139846047,7	MCF-7	breast:
17	chr9:139742564..139744114-chr9:139842941..139845499,2	K562	blood:
18	chr9:139841073..139844271-chr9:139927341..139931765,7	MCF-7	breast:
19	chr9:139835281..139842012-chr9:139842308..139848601,13	K562	blood:
20	chr9:139842440..139845608-chr9:139845661..139851377,6	K562	blood:
21	chr9:139842605..139846336-chr9:139889751..139893844,5	K562	blood:
22	chr9:139842583..139844797-chr9:139871048..139874823,3	MCF-7	breast:
23	chr9:139745090..139747396-chr9:139842193..139844576,2	K562	blood:
24	chr9:139834936..139840862-chr9:139842314..139844588,8	K562	blood:
25	chr9:139835507..139852162-chr9:139884980..139895056,54	MCF-7	breast:
26	chr9:139836453..139844148-chr9:139884945..139890988,15	K562	blood:
27	chr9:139842379..139846255-chr9:139920435..139923708,4	MCF-7	breast:
28	chr9:139843163..139846708-chr9:139847303..139850951,4	MCF-7	breast:

Variant related genes	Relation type
FBXW5	TF binding region
LCN12	TF binding region
ENSG00000107281	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000232434	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000197191	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000184925	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000180549	Chromatin interaction
ENSG00000214402	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000235117	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000148362	Chromatin interaction
ENSG00000273066	Chromatin interaction
ENSG00000107317	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11792444	0.84[ASN][1000 genomes]
rs17613	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879011	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879012	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs20574	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2292926	0.84[ASN][1000 genomes]
rs34635210	0.86[EUR][1000 genomes]
rs41307442	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41309980	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4880077	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4880169	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4880170	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59672575	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7034646	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73574336	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7875913	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs884112	1.00[ASN][1000 genomes]
rs884113	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
10	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
11	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
12	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
13	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
14	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
15	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
16	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
17	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
18	nsv894461	chr9:139683224-139860264	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
19	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
20	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
21	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
22	nsv894468	chr9:139693992-139860264	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
23	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
24	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
25	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
26	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
27	nsv894482	chr9:139709976-139860264	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	78 gene(s)	inside rSNPs	diseases
28	nsv894483	chr9:139709976-139963091	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	119 gene(s)	inside rSNPs	diseases
29	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
30	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
31	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
32	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
33	nsv1047479	chr9:139754184-139869440	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	60 gene(s)	inside rSNPs	diseases
34	nsv540353	chr9:139754184-139869440	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	60 gene(s)	inside rSNPs	diseases
35	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
36	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
37	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
38	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
39	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
40	nsv894500	chr9:139823670-139930945	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
41	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
42	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
43	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
44	nsv894504	chr9:139831696-139844151	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
45	nsv894505	chr9:139831696-139848717	Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
46	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
47	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
48	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4880171	LCN12	cis	Thyroid	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139838800-139844000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:139839400-139844000	Enhancers	Placenta	Placenta
3	chr9:139839600-139844000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:139839600-139844000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:139839600-139844000	Enhancers	Fetal Muscle Leg	muscle
6	chr9:139839800-139844000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:139840800-139844200	Enhancers	Spleen	Spleen
8	chr9:139841800-139844000	Weak transcription	Fetal Lung	lung
9	chr9:139842000-139844000	Enhancers	Brain Angular Gyrus	brain
10	chr9:139842200-139844600	Enhancers	Stomach Mucosa	stomach
11	chr9:139842800-139844000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:139842800-139844000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:139842800-139844000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:139842800-139844000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:139842800-139844000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:139842800-139844000	Enhancers	Fetal Muscle Trunk	muscle
17	chr9:139842800-139844000	Weak transcription	Gastric	stomach
18	chr9:139842800-139844000	Weak transcription	Lung	lung
19	chr9:139842800-139844000	Weak transcription	HSMM	muscle
20	chr9:139842800-139844000	Weak transcription	HSMMtube	muscle
21	chr9:139842800-139844000	Weak transcription	NH-A	brain
22	chr9:139842800-139844000	Weak transcription	NHDF-Ad	bronchial
23	chr9:139842800-139844000	Weak transcription	NHLF	lung
24	chr9:139842800-139844200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr9:139843000-139844000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:139843000-139844000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:139843000-139844000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr9:139843000-139844200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:139843200-139844000	Enhancers	Primary B cells from peripheral blood	blood
30	chr9:139843400-139844000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:139843400-139844000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr9:139843400-139844000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr9:139843400-139844000	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr9:139843400-139844000	Flanking Active TSS	Fetal Intestine Small	intestine
35	chr9:139843400-139844000	Flanking Active TSS	Hela-S3	cervix
36	chr9:139843400-139845000	Active TSS	Thymus	Thymus
37	chr9:139843600-139844000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:139843600-139844000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr9:139843600-139844000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr9:139843600-139844000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr9:139843600-139844000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:139843600-139844000	Flanking Active TSS	Colonic Mucosa	Colon
43	chr9:139843600-139844000	Enhancers	Fetal Brain Male	brain
44	chr9:139843600-139844000	Flanking Active TSS	Fetal Brain Female	brain
45	chr9:139843600-139844000	Flanking Active TSS	Fetal Intestine Large	intestine
46	chr9:139843600-139844000	Weak transcription	Fetal Kidney	kidney
47	chr9:139843600-139844000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr9:139843600-139844000	Enhancers	Small Intestine	intestine
49	chr9:139843600-139844000	Flanking Active TSS	A549	lung
50	chr9:139843600-139844000	Enhancers	HMEC	breast

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