Variant report

Variant	rs7875913
Chromosome Location	chr9:139839447-139839448
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:139839320-139839470	WI-38	lung:	n/a	chr9:139839320-139839333
2	NR2F2	chr9:139839076-139839737	K562	blood:	n/a	n/a
3	SRF	chr9:139838776-139839754	HCT-116	colon:	n/a	chr9:139839402-139839412
4	PML	chr9:139838853-139839657	K562	blood:	n/a	n/a
5	GTF2F1	chr9:139838919-139839546	K562	blood:	n/a	n/a
6	CTCF	chr9:139838495-139839816	A549	lung:	n/a	chr9:139839320-139839333 chr9:139838896-139838909 chr9:139839317-139839335 chr9:139838774-139838787 chr9:139838771-139838789 chr9:139838774-139838787
7	POLR2A	chr9:139839433-139839812	HepG2	liver:	n/a	n/a
8	YY1	chr9:139838383-139839879	HepG2	liver:	n/a	chr9:139839642-139839653
9	CTCF	chr9:139839173-139839473	Gliobla	brain:	n/a	chr9:139839320-139839333 chr9:139839317-139839335
10	RCOR1	chr9:139838688-139839928	K562	blood:	n/a	n/a
11	MAX	chr9:139838929-139839539	H1-hESC	embryonic stem cell:	n/a	n/a
12	FOXM1	chr9:139838953-139839471	GM12878	blood:	n/a	n/a
13	SP1	chr9:139838950-139839568	H1-hESC	embryonic stem cell:	n/a	chr9:139839337-139839346 chr9:139839335-139839347 chr9:139839336-139839346 chr9:139839336-139839345 chr9:139839336-139839346 chr9:139839337-139839346 chr9:139839335-139839347
14	MAZ	chr9:139838275-139839575	Hela-S3	cervix:	n/a	chr9:139838757-139838767
15	POLR2A	chr9:139838386-139839487	K562	blood:	n/a	n/a
16	POLR2A	chr9:139837660-139839658	PANC-1	pancreas:	n/a	n/a
17	EGR1	chr9:139838862-139839548	ECC-1	luminal epithelium:	n/a	chr9:139839230-139839239 chr9:139839275-139839284 chr9:139839065-139839079 chr9:139839121-139839135 chr9:139839331-139839344 chr9:139839047-139839061 chr9:139838995-139839005 chr9:139839097-139839111
18	POLR2A	chr9:139838787-139839451	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr9:139833343-139840280	K562	blood:	n/a	n/a
20	TFAP2C	chr9:139838535-139839710	Hela-S3	cervix:	n/a	chr9:139839166-139839181
21	CREB1	chr9:139838513-139839736	K562	blood:	n/a	n/a
22	CTCF	chr9:139839165-139839478	Pancreas_OC	pancreas:	n/a	chr9:139839320-139839333 chr9:139839317-139839335
23	POLR2A	chr9:139838292-139839571	K562	blood:	n/a	n/a
24	CTCF	chr9:139839078-139839658	MCF-7	breast:	n/a	chr9:139839320-139839333 chr9:139839317-139839335
25	TRIM28	chr9:139839060-139839687	K562	blood:	n/a	n/a
26	ATF3	chr9:139839047-139839690	A549	lung:	n/a	chr9:139839433-139839446
27	ARID3A	chr9:139839043-139839584	HepG2	liver:	n/a	n/a
28	PAX5	chr9:139838992-139839447	GM12878	blood:	n/a	n/a
29	CTCF	chr9:139838616-139839558	K562	blood:	n/a	chr9:139839320-139839333 chr9:139838896-139838909 chr9:139839317-139839335 chr9:139838774-139838787 chr9:139838771-139838789 chr9:139838774-139838787
30	E2F6	chr9:139839079-139839647	A549	lung:	n/a	chr9:139839275-139839284 chr9:139839230-139839239
31	RFX5	chr9:139838481-139839543	Hela-S3	cervix:	n/a	chr9:139839399-139839408
32	ELF1	chr9:139838867-139839828	HepG2	liver:	n/a	chr9:139839382-139839391
33	TBL1XR1	chr9:139838984-139839679	K562	blood:	n/a	n/a
34	POLR2A	chr9:139833668-139839561	HL-60	blood:	n/a	n/a
35	NRF1	chr9:139838900-139839501	GM12878	blood:	n/a	chr9:139839029-139839043 chr9:139838996-139839005 chr9:139839274-139839288 chr9:139839226-139839240 chr9:139839336-139839345 chr9:139839271-139839285 chr9:139839229-139839240 chr9:139839229-139839240 chr9:139839276-139839285 chr9:139839274-139839285 chr9:139839274-139839285 chr9:139839323-139839332
36	JUND	chr9:139837881-139839562	A549	lung:	n/a	chr9:139839254-139839268 chr9:139838995-139839004
37	RAD21	chr9:139838724-139839491	SK-N-SH_RA	brain:	n/a	chr9:139838763-139838777 chr9:139839320-139839332 chr9:139838773-139838787 chr9:139838882-139838896 chr9:139839319-139839333 chr9:139838765-139838778
38	GTF3C2	chr9:139839102-139839818	K562	blood:	n/a	n/a
39	POLR2A	chr9:139836408-139840293	HepG2	liver:	n/a	n/a
40	JUN	chr9:139838984-139839630	K562	blood:	n/a	chr9:139839254-139839268 chr9:139838995-139839004
41	POLR2A	chr9:139838640-139839471	Hela-S3	cervix:	n/a	n/a
42	NRF1	chr9:139839035-139839523	H1-hESC	embryonic stem cell:	n/a	chr9:139839274-139839288 chr9:139839226-139839240 chr9:139839336-139839345 chr9:139839271-139839285 chr9:139839229-139839240 chr9:139839229-139839240 chr9:139839276-139839285 chr9:139839274-139839285 chr9:139839274-139839285 chr9:139839323-139839332
43	POLR2A	chr9:139838784-139839543	SK-N-MC	brain:	n/a	n/a
44	CTCF	chr9:139838947-139839735	HCT-116	colon:	n/a	chr9:139839320-139839333 chr9:139839317-139839335
45	RUNX3	chr9:139838287-139839591	GM12878	blood:	n/a	n/a
46	RAD21	chr9:139838564-139839539	ECC-1	luminal epithelium:	n/a	chr9:139838763-139838777 chr9:139839320-139839332 chr9:139838773-139838787 chr9:139838882-139838896 chr9:139839319-139839333 chr9:139838765-139838778
47	CTCF	chr9:139839300-139839450	GM12872	blood:	n/a	chr9:139839320-139839333 chr9:139839317-139839335
48	YY1	chr9:139838583-139839729	K562	blood:	n/a	chr9:139839642-139839653
49	MAZ	chr9:139838314-139839645	K562	blood:	n/a	chr9:139838757-139838767
50	MYC	chr9:139838974-139839469	HUVEC	blood vessel:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:139839439-139839489	AoSMC	blood vessel:	n/a
2	chr9:139839439-139839489	SK-N-MC	brain:	n/a
3	chr9:139839439-139839489	ProgFib	skin:	n/a
4	chr9:139839439-139839489	BJ	skin:	n/a
5	chr9:139839439-139839489	SKMC	muscle:	n/a
6	chr9:139839439-139839489	BE2_C	brain:	n/a
7	chr9:139839439-139839489	U87	brain:	n/a
8	chr9:139839439-139839489	AG09319	gingival:	n/a
9	chr9:139839439-139839489	AG09309	skin:	n/a
10	chr9:139839439-139839489	PFSK-1	brain:	n/a
11	chr9:139839439-139839489	HIPEpiC	eye:	n/a
12	chr9:139839439-139839489	SK-N-SH_RA	brain:	n/a
13	chr9:139839439-139839489	HPAEpiC	pulmonary alveolar:	n/a
14	chr9:139839439-139839489	GM12891	blood:	n/a
15	chr9:139839439-139839489	HUVEC	blood vessel:	n/a
16	chr9:139839439-139839489	Hepatocyte	liver:	n/a
17	chr9:139839439-139839489	HEEpiC	esophagus:	n/a
18	chr9:139839439-139839489	MCF-7	breast:	n/a
19	chr9:139839439-139839489	T-47D	breast:	n/a
20	chr9:139839439-139839489	HCF	heart:	n/a
21	chr9:139839439-139839489	HMEC	breast:	n/a
22	chr9:139839439-139839489	HRCEpiC	kidney:	n/a
23	chr9:139839439-139839489	PANC-1	pancreas:	n/a
24	chr9:139839439-139839489	AG04450	lung:	fetal
25	chr9:139839439-139839489	Hela-S3	cervix:	n/a
26	chr9:139839439-139839489	LNCaP	prostate:	n/a
27	chr9:139839439-139839489	Caco-2	colon:	n/a
28	chr9:139839439-139839489	K562	blood:	n/a
29	chr9:139839439-139839489	RPTEC	kidney:	n/a
30	chr9:139839439-139839489	NH-A	brain:	n/a
31	chr9:139839439-139839489	NHDF-neo	bronchial:	n/a
32	chr9:139839439-139839489	GM12878	blood:	n/a
33	chr9:139839439-139839489	HepG2	liver:	n/a
34	chr9:139839439-139839489	IMR90	lung:	fetal
35	chr9:139839439-139839489	HL-60	blood:	n/a
36	chr9:139839439-139839489	CMK	blood:	n/a
37	chr9:139839439-139839489	ovcar-3	ovarian:	n/a
38	chr9:139839439-139839489	NHBE	bronchial:	n/a
39	chr9:139839439-139839489	GM06990	blood:	n/a
40	chr9:139839439-139839489	HRPEpiC	eye:	n/a
41	chr9:139839439-139839489	AG04449	skin:	fetal
42	chr9:139839439-139839489	H1-hESC	embryonic stem cell:	embryo
43	chr9:139839439-139839489	HCT-116	colon:	n/a
44	chr9:139839439-139839489	MCF10A-Er-Src	breast:	n/a
45	chr9:139839439-139839489	GM12892	blood:	n/a
46	chr9:139839439-139839489	HRE	kidney:	n/a
47	chr9:139839439-139839489	PrEC	prostate:	n/a
48	chr9:139839439-139839489	HEK293	kidney:	embryo
49	chr9:139839439-139839489	SAEC	small airway:	n/a
50	chr9:139839439-139839489	GM19239	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139837721..139840687-chr9:139929807..139932623,3	K562	blood:
2	chr9:139741905..139745759-chr9:139836394..139841074,11	K562	blood:
3	chr9:139837707..139840249-chr9:139937905..139941207,3	MCF-7	breast:
4	chr9:139684892..139687578-chr9:139837356..139841601,5	MCF-7	breast:
5	chr9:139838060..139839792-chr9:139933494..139936101,2	K562	blood:
6	chr9:139759084..139762257-chr9:139836822..139839684,5	MCF-7	breast:
7	chr9:139837844..139839533-chr9:139872878..139875055,2	MCF-7	breast:
8	chr9:139836491..139840843-chr9:139920877..139924515,5	K562	blood:
9	chr9:139837344..139842228-chr9:139920048..139923537,8	MCF-7	breast:
10	chr9:139778379..139782493-chr9:139835538..139841683,7	K562	blood:
11	chr9:139775744..139785357-chr9:139834831..139843301,18	MCF-7	breast:
12	chr9:139791042..139798100-chr9:139837150..139840881,10	MCF-7	breast:
13	chr9:139836429..139841703-chr9:139845168..139848601,5	K562	blood:
14	chr9:139836105..139846821-chr9:139919094..139924819,24	MCF-7	breast:
15	chr9:139837395..139841047-chr9:139870338..139873414,3	MCF-7	breast:
16	chr9:139837701..139840548-chr9:140135499..140137086,2	K562	blood:
17	chr9:139790926..139800327-chr9:139835284..139840384,15	MCF-7	breast:
18	chr9:139836972..139840310-chr9:139885072..139887174,4	K562	blood:
19	chr9:139738593..139754524-chr9:139832961..139844322,29	MCF-7	breast:
20	chr9:139741905..139746962-chr9:139835280..139841074,9	K562	blood:
21	chr9:139834936..139840862-chr9:139842314..139844588,8	K562	blood:
22	chr9:139836188..139848313-chr9:139883522..139894647,40	MCF-7	breast:
23	chr9:139751242..139753857-chr9:139838389..139841093,3	MCF-7	breast:
24	chr9:139835281..139842012-chr9:139842308..139848601,13	K562	blood:
25	chr9:139700428..139703391-chr9:139838721..139840265,2	K562	blood:
26	chr9:139775623..139777641-chr9:139838183..139840803,2	MCF-7	breast:
27	chr9:139684319..139687155-chr9:139837681..139840267,3	K562	blood:
28	chr9:139693946..139696412-chr9:139837161..139840313,3	MCF-7	breast:
29	chr16:763650..766646-chr9:139838814..139840385,2	MCF-7	breast:
30	chr9:139838439..139841309-chr9:139947694..139949623,3	MCF-7	breast:
31	chr9:139750899..139754581-chr9:139837670..139840574,3	K562	blood:
32	chr9:139621075..139623507-chr9:139837293..139839645,2	K562	blood:
33	chr9:139837772..139841099-chr9:140061460..140064939,4	MCF-7	breast:
34	chr9:139758990..139764783-chr9:139834742..139840758,9	MCF-7	breast:
35	chr9:139760347..139763007-chr9:139836965..139839769,2	K562	blood:
36	chr9:139837737..139839600-chr9:139871681..139874373,2	K562	blood:
37	chr9:139656219..139658957-chr9:139838927..139840752,2	K562	blood:
38	chr9:139837304..139841351-chr9:139889068..139893319,4	K562	blood:
39	chr9:139734155..139746957-chr9:139834710..139842618,30	MCF-7	breast:
40	chr9:139839168..139840906-chr9:139862731..139865227,2	MCF-7	breast:
41	chr9:139621075..139623829-chr9:139838145..139840956,4	K562	blood:
42	chr9:139837657..139841229-chr9:139875890..139877651,3	MCF-7	breast:
43	chr9:139835507..139852162-chr9:139884980..139895056,54	MCF-7	breast:
44	chr9:139836453..139844148-chr9:139884945..139890988,15	K562	blood:
45	chr9:139837381..139841533-chr9:139948424..139951873,5	MCF-7	breast:
46	chr9:139813120..139815752-chr9:139837094..139840081,2	MCF-7	breast:
47	chr9:139777155..139782891-chr9:139837659..139842394,7	K562	blood:
48	chr9:139685045..139687775-chr9:139838528..139840680,3	MCF-7	breast:

Variant related genes	Relation type
LCN12	TF binding region
FBXW5	TF binding region
C8G	TF binding region
FBXW5	CpG island
LCN12	CpG island
C8G	CpG island
ENSG00000228544	Chromatin interaction
ENSG00000214402	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000272679	Chromatin interaction
ENSG00000263697	Chromatin interaction
ENSG00000107317	Chromatin interaction
ENSG00000184709	Chromatin interaction
ENSG00000198454	Chromatin interaction
ENSG00000184925	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000176884	Chromatin interaction
ENSG00000273066	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000177984	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000103260	Chromatin interaction
ENSG00000232434	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000148362	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000107223	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000266507	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000235117	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1879011	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1879012	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs20574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34635210	0.84[EUR][1000 genomes]
rs41307442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41309980	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4880077	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4880169	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4880170	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4880171	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59672575	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7034646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73574336	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs884112	0.86[ASN][1000 genomes]
rs884113	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
10	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
11	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
12	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
13	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
14	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
15	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
16	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
17	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
18	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
19	nsv894461	chr9:139683224-139860264	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
20	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
21	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
22	esv1846327	chr9:139690144-139841512	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	86 gene(s)	inside rSNPs	diseases
23	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
24	nsv894468	chr9:139693992-139860264	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
25	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
26	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
27	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
28	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
29	nsv894482	chr9:139709976-139860264	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	78 gene(s)	inside rSNPs	diseases
30	nsv894483	chr9:139709976-139963091	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	119 gene(s)	inside rSNPs	diseases
31	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
32	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
33	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
34	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
35	nsv1047479	chr9:139754184-139869440	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	60 gene(s)	inside rSNPs	diseases
36	nsv540353	chr9:139754184-139869440	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	60 gene(s)	inside rSNPs	diseases
37	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
38	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
39	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
40	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
41	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
42	nsv894500	chr9:139823670-139930945	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
43	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
44	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
45	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
46	nsv894504	chr9:139831696-139844151	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
47	nsv894505	chr9:139831696-139848717	Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
48	nsv615987	chr9:139834195-139842262	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
49	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
50	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7875913	LCN12	cis	Thyroid	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139838000-139839800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:139838200-139839600	Active TSS	Fetal Lung	lung
3	chr9:139838200-139839600	Active TSS	Ovary	ovary
4	chr9:139838400-139839600	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr9:139838400-139839600	Active TSS	Fetal Brain Female	brain
6	chr9:139838400-139839800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:139838400-139839800	Active TSS	Rectal Smooth Muscle	rectum
8	chr9:139838800-139840000	Enhancers	Fetal Thymus	thymus
9	chr9:139838800-139844000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:139839000-139839600	Enhancers	Fetal Brain Male	brain
11	chr9:139839000-139839800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr9:139839000-139839800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:139839000-139840000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:139839000-139842000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:139839000-139842400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:139839000-139843600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:139839000-139843800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr9:139839200-139839600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:139839200-139839600	Weak transcription	Aorta	Aorta
20	chr9:139839200-139839600	Enhancers	HSMM	muscle
21	chr9:139839200-139839600	Enhancers	NH-A	brain
22	chr9:139839200-139839800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:139839200-139839800	Enhancers	Fetal Muscle Trunk	muscle
24	chr9:139839200-139839800	Enhancers	Gastric	stomach
25	chr9:139839200-139839800	Enhancers	Left Ventricle	heart
26	chr9:139839200-139839800	Enhancers	Lung	lung
27	chr9:139839200-139839800	Enhancers	Pancreas	Pancrea
28	chr9:139839200-139839800	Genic enhancers	Right Atrium	heart
29	chr9:139839200-139839800	Enhancers	Right Ventricle	heart
30	chr9:139839200-139839800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr9:139839200-139840000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:139839200-139840000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:139839200-139840400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:139839200-139840400	Enhancers	Spleen	Spleen
35	chr9:139839200-139840600	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr9:139839200-139840800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:139839200-139841200	Weak transcription	HSMMtube	muscle
38	chr9:139839200-139842000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:139839200-139842200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr9:139839200-139842400	Weak transcription	NHLF	lung
41	chr9:139839200-139842600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:139839200-139843600	Weak transcription	Small Intestine	intestine
43	chr9:139839400-139839600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr9:139839400-139839600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
45	chr9:139839400-139839600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:139839400-139839600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
47	chr9:139839400-139839600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:139839400-139839600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr9:139839400-139839600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr9:139839400-139839600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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