Variant report

Variant	rs4884835
Chromosome Location	chr13:69781603-69781604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1446380	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2121293	0.82[ASN][1000 genomes]
rs34456127	0.85[ASN][1000 genomes]
rs4567590	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58043375	0.85[ASN][1000 genomes]
rs7139612	0.82[ASN][1000 genomes]
rs7358906	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs921059	0.85[ASN][1000 genomes]
rs9317793	0.84[ASN][1000 genomes]
rs9317797	0.85[ASN][1000 genomes]
rs9541824	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9541825	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9564544	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9564545	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9564552	0.87[ASN][1000 genomes]
rs9572111	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9572112	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9572113	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9572117	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9572123	0.84[ASN][1000 genomes]
rs9572127	0.82[ASN][1000 genomes]
rs9572128	0.85[ASN][1000 genomes]
rs9599431	0.83[ASN][1000 genomes]
rs9599432	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900465	chr13:69568612-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv900472	chr13:69631125-69789325	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv900473	chr13:69652578-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv900476	chr13:69759676-69782361	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900477	chr13:69759676-69789325	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv900478	chr13:69759676-69812252	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv455962	chr13:69762895-69784971	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv562204	chr13:69762895-69784971	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv471148	chr13:69762943-69782361	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69771000-69782600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:69777600-69782200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:69777600-69782400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:69777600-69782400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:69778200-69783000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:69781600-69781800	Flanking Bivalent TSS/Enh	Pancreas	Pancrea

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