Variant report

Variant	rs9599431
Chromosome Location	chr13:69795992-69795993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr13:69795750-69796029	K562	blood:	n/a	n/a
2	TBP	chr13:69795492-69796965	K562	blood:	n/a	n/a
3	POLR2A	chr13:69795863-69796610	K562	blood:	n/a	n/a
4	ZMIZ1	chr13:69795947-69796144	K562	blood:	n/a	n/a
5	YY1	chr13:69795929-69796074	K562	blood:	n/a	n/a
6	PML	chr13:69795851-69796187	K562	blood:	n/a	n/a
7	POLR2A	chr13:69795852-69796256	K562	blood:	n/a	n/a
8	MAFF	chr13:69795737-69796051	K562	blood:	n/a	n/a
9	IRF1	chr13:69795726-69796161	K562	blood:	n/a	n/a
10	PML	chr13:69795802-69796215	K562	blood:	n/a	n/a
11	POLR2A	chr13:69795708-69796988	K562	blood:	n/a	n/a
12	HEY1	chr13:69795814-69796874	K562	blood:	n/a	n/a
13	JUND	chr13:69795848-69796109	K562	blood:	n/a	n/a
14	HEY1	chr13:69795815-69796706	K562	blood:	n/a	n/a
15	GTF2F1	chr13:69795914-69796053	K562	blood:	n/a	n/a
16	MYC	chr13:69795987-69796847	K562	blood:	n/a	n/a
17	POLR2A	chr13:69795806-69796583	K562	blood:	n/a	n/a
18	POLR2A	chr13:69795814-69796829	K562	blood:	n/a	n/a
19	TAF1	chr13:69795894-69796142	K562	blood:	n/a	n/a
20	POLR2A	chr13:69795778-69796434	K562	blood:	n/a	n/a
21	POLR2A	chr13:69795786-69796951	K562	blood:	n/a	n/a
22	RCOR1	chr13:69795648-69796177	K562	blood:	n/a	n/a
23	POLR2A	chr13:69795863-69796254	K562	blood:	n/a	n/a
24	CEBPD	chr13:69795817-69796165	K562	blood:	n/a	n/a
25	GTF2B	chr13:69795853-69796053	K562	blood:	n/a	n/a
26	NFYB	chr13:69795741-69796015	K562	blood:	n/a	n/a
27	IRF1	chr13:69795905-69796139	K562	blood:	n/a	n/a
28	POLR2A	chr13:69795826-69796226	K562	blood:	n/a	n/a
29	POLR2A	chr13:69795849-69796252	K562	blood:	n/a	n/a
30	EP300	chr13:69795806-69796108	GM12878	blood:	n/a	n/a
31	TAF1	chr13:69795892-69796127	K562	blood:	n/a	n/a
32	POLR2A	chr13:69795449-69796678	K562	blood:	n/a	n/a
33	MAFK	chr13:69795740-69796027	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69795398..69798188-chr13:69884200..69887047,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BORA-6	chr13:69795972-69796802	NONHSAT034241

No data

Variant related genes	Relation type
LINC00383	TF binding region
ENSG00000235221	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1446380	0.81[ASN][1000 genomes]
rs2121293	0.90[ASN][1000 genomes]
rs34456127	0.88[ASN][1000 genomes]
rs4389038	0.87[ASN][1000 genomes]
rs4884835	0.83[ASN][1000 genomes]
rs58043375	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7139612	0.90[ASN][1000 genomes]
rs7358906	0.81[ASN][1000 genomes]
rs921059	0.88[ASN][1000 genomes]
rs9317793	0.87[ASN][1000 genomes]
rs9317797	0.88[ASN][1000 genomes]
rs9541824	0.82[ASN][1000 genomes]
rs9541825	0.83[ASN][1000 genomes]
rs9564544	0.83[ASN][1000 genomes]
rs9564545	0.81[ASN][1000 genomes]
rs9564552	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9572111	0.81[ASN][1000 genomes]
rs9572112	0.82[ASN][1000 genomes]
rs9572113	0.82[ASN][1000 genomes]
rs9572117	0.84[ASN][1000 genomes]
rs9572123	0.92[ASN][1000 genomes]
rs9572127	0.90[ASN][1000 genomes]
rs9572128	0.88[ASN][1000 genomes]
rs9599432	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900465	chr13:69568612-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv900473	chr13:69652578-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900478	chr13:69759676-69812252	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3525265	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3525266	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69795400-69798200	Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links