Variant report

Variant	rs9317797
Chromosome Location	chr13:69821199-69821200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1249772	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1249773	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1249774	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1446380	0.83[ASN][1000 genomes]
rs1446384	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1446385	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1572427	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1572428	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1838808	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1853310	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1855899	0.81[ASN][1000 genomes]
rs2065840	0.83[ASN][1000 genomes]
rs2121293	0.94[ASN][1000 genomes]
rs2593490	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2782484	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34456127	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389038	0.91[ASN][1000 genomes]
rs4884835	0.85[ASN][1000 genomes]
rs58043375	1.00[ASN][1000 genomes]
rs7139612	0.94[ASN][1000 genomes]
rs7325342	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7326647	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7327635	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7336505	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7358906	0.86[ASN][1000 genomes]
rs921059	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317793	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9317800	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9529557	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9529558	0.83[ASN][1000 genomes]
rs9541824	0.84[ASN][1000 genomes]
rs9541825	0.85[ASN][1000 genomes]
rs9541879	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9541880	0.84[AMR][1000 genomes]
rs9564544	0.85[ASN][1000 genomes]
rs9564545	0.83[ASN][1000 genomes]
rs9564552	0.97[ASN][1000 genomes]
rs9572111	0.83[ASN][1000 genomes]
rs9572112	0.84[ASN][1000 genomes]
rs9572113	0.84[ASN][1000 genomes]
rs9572117	0.86[ASN][1000 genomes]
rs9572123	0.89[ASN][1000 genomes]
rs9572127	0.94[ASN][1000 genomes]
rs9572128	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9572151	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9599431	0.88[ASN][1000 genomes]
rs9599432	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9599445	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs967685	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs989143	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3525265	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3525266	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69813200-69821800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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