Variant report

Variant	rs967685
Chromosome Location	chr13:69792202-69792203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69788123..69789818-chr13:69791504..69794154,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1249772	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1249773	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1249774	0.86[CHB][hapmap]
rs1446380	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1446384	0.87[JPT][hapmap]
rs1446385	0.86[JPT][hapmap]
rs1572427	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1572428	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs2121293	0.82[ASN][1000 genomes]
rs2593490	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs34456127	0.85[ASN][1000 genomes]
rs4567590	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4884835	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58043375	0.85[ASN][1000 genomes]
rs7139612	0.82[ASN][1000 genomes]
rs7358906	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs921059	0.85[ASN][1000 genomes]
rs9317793	0.85[ASN][1000 genomes]
rs9317797	0.85[ASN][1000 genomes]
rs9541824	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9541825	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9564544	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9564545	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9564552	0.88[ASN][1000 genomes]
rs9572111	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9572112	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9572113	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9572117	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9572123	0.84[ASN][1000 genomes]
rs9572127	0.82[ASN][1000 genomes]
rs9572128	0.85[ASN][1000 genomes]
rs9599431	0.83[ASN][1000 genomes]
rs9599432	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900465	chr13:69568612-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv900473	chr13:69652578-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900478	chr13:69759676-69812252	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv977401	chr13:69782667-69793555	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links