Variant report

Variant	rs1249772
Chromosome Location	chr13:69886213-69886214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69795398..69798188-chr13:69884200..69887047,2	K562	blood:
2	chr13:69882987..69885137-chr13:69885887..69888011,2	K562	blood:

Variant related genes	Relation type
ENSG00000237534	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1249773	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1249774	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1249775	0.92[ASN][1000 genomes]
rs1446384	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1446385	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs1572427	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1572428	0.82[CHB][hapmap]
rs17605284	0.89[ASN][1000 genomes]
rs1838808	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1853310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1853311	0.91[ASN][1000 genomes]
rs1855899	0.94[ASN][1000 genomes]
rs1867797	0.87[ASN][1000 genomes]
rs2065839	0.89[ASN][1000 genomes]
rs2065840	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2121288	0.89[ASN][1000 genomes]
rs2325208	0.91[ASN][1000 genomes]
rs2593490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2782484	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34456127	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7325342	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7326647	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7327635	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7336505	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7989827	0.91[ASN][1000 genomes]
rs921059	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9317793	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9317797	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9317800	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9529557	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9529558	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9541879	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9541880	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9564561	0.89[ASN][1000 genomes]
rs9564564	0.87[ASN][1000 genomes]
rs9572128	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9572144	0.89[ASN][1000 genomes]
rs9572150	0.89[ASN][1000 genomes]
rs9572151	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9599445	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs967685	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs989143	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900479	chr13:69824819-69984297	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv974213	chr13:69877439-69889811	Inactive region	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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