Variant report

Variant	rs2325208
Chromosome Location	chr13:69862043-69862044
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1249772	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[ASN][1000 genomes]
rs1249773	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1249774	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1249775	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1446384	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs1446385	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1572427	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs17605284	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1838808	0.94[ASN][1000 genomes]
rs1853310	0.94[ASN][1000 genomes]
rs1853311	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1855899	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1867797	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2065839	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2065840	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2121288	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2593490	0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7325342	0.94[ASN][1000 genomes]
rs7326647	0.96[ASN][1000 genomes]
rs7327635	0.91[ASN][1000 genomes]
rs7336505	0.98[ASN][1000 genomes]
rs7989827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317800	0.97[ASN][1000 genomes]
rs9529557	0.96[ASN][1000 genomes]
rs9529558	0.96[ASN][1000 genomes]
rs9541879	0.96[ASN][1000 genomes]
rs9541880	0.84[ASN][1000 genomes]
rs9564561	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9564564	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9572144	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9572150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9572151	0.96[ASN][1000 genomes]
rs9599445	0.95[ASN][1000 genomes]
rs967685	0.86[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap]
rs989143	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900479	chr13:69824819-69984297	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69861200-69862200	Active TSS	A549	lung
2	chr13:69861400-69862800	Active TSS	GM12878-XiMat	blood
3	chr13:69862000-69862200	Active TSS	Fetal Lung	lung

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