Variant report

Variant	rs17605284
Chromosome Location	chr13:69867704-69867705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69839216..69841490-chr13:69867661..69869798,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1249772	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1249773	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1249774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1249775	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1446384	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1446385	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1572427	0.87[CHB][hapmap]
rs1838808	0.92[ASN][1000 genomes]
rs1853310	0.92[ASN][1000 genomes]
rs1853311	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1855899	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1867797	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2065839	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2065840	0.93[ASN][1000 genomes]
rs2121288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2121293	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2325208	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2593490	0.96[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2593500	0.84[YRI][hapmap]
rs4389038	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7139612	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7325342	0.92[ASN][1000 genomes]
rs7326647	0.94[ASN][1000 genomes]
rs7327635	0.88[ASN][1000 genomes]
rs7336505	0.92[ASN][1000 genomes]
rs7989827	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9317800	0.92[ASN][1000 genomes]
rs9529557	0.93[ASN][1000 genomes]
rs9529558	0.93[ASN][1000 genomes]
rs9541879	0.94[ASN][1000 genomes]
rs9541880	0.81[ASN][1000 genomes]
rs9564561	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9564564	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9572123	0.80[EUR][1000 genomes]
rs9572127	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9572144	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9572150	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9572151	0.94[ASN][1000 genomes]
rs9599445	0.92[ASN][1000 genomes]
rs967685	0.83[CEU][hapmap];0.87[CHB][hapmap]
rs989143	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900479	chr13:69824819-69984297	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69865800-69870200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:69867200-69868200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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