Variant report

Variant	rs1249774
Chromosome Location	chr13:69884851-69884852
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69795398..69798188-chr13:69884200..69887047,2	K562	blood:
2	chr13:69882987..69885137-chr13:69885887..69888011,2	K562	blood:

Variant related genes	Relation type
ENSG00000237534	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1249772	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1249773	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1249775	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446384	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1446385	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1572427	0.86[CHB][hapmap]
rs1572428	0.83[JPT][hapmap]
rs17605284	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1838808	0.89[ASN][1000 genomes]
rs1853310	0.92[ASN][1000 genomes]
rs1853311	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1855899	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1867797	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2065839	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2065840	0.91[ASN][1000 genomes]
rs2121288	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2121293	0.81[ASN][1000 genomes]
rs2325208	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2593490	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2593500	1.00[YRI][hapmap]
rs4389038	0.81[ASN][1000 genomes]
rs7139612	0.81[ASN][1000 genomes]
rs7325342	0.92[ASN][1000 genomes]
rs7326647	0.90[ASN][1000 genomes]
rs7327635	0.86[ASN][1000 genomes]
rs7336505	0.89[ASN][1000 genomes]
rs7989827	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9317800	0.89[ASN][1000 genomes]
rs9529557	0.91[ASN][1000 genomes]
rs9529558	0.91[ASN][1000 genomes]
rs9541879	0.90[ASN][1000 genomes]
rs9564561	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9564564	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9572127	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9572144	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9572150	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9572151	0.90[ASN][1000 genomes]
rs9599445	0.89[ASN][1000 genomes]
rs967685	0.86[CHB][hapmap]
rs989143	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900479	chr13:69824819-69984297	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv974213	chr13:69877439-69889811	Inactive region	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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