Variant report

Variant	rs7327635
Chromosome Location	chr13:69844486-69844487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1249772	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1249773	0.89[ASN][1000 genomes]
rs1249774	0.86[ASN][1000 genomes]
rs1249775	0.85[ASN][1000 genomes]
rs17605284	0.88[ASN][1000 genomes]
rs1838808	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1853310	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1853311	0.88[ASN][1000 genomes]
rs1855899	0.93[ASN][1000 genomes]
rs1867797	0.87[ASN][1000 genomes]
rs2065839	0.89[ASN][1000 genomes]
rs2065840	0.95[ASN][1000 genomes]
rs2121288	0.89[ASN][1000 genomes]
rs2325208	0.91[ASN][1000 genomes]
rs2593490	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2782484	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34456127	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7325342	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7326647	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7336505	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7989827	0.91[ASN][1000 genomes]
rs921059	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9317793	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9317797	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9317800	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9529557	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9529558	0.95[ASN][1000 genomes]
rs9541879	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9541880	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9564561	0.88[ASN][1000 genomes]
rs9564564	0.87[ASN][1000 genomes]
rs9572128	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9572144	0.89[ASN][1000 genomes]
rs9572150	0.88[ASN][1000 genomes]
rs9572151	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9599445	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs989143	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3525265	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3525266	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900479	chr13:69824819-69984297	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69839600-69856400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links