Variant report

Variant	rs2782484
Chromosome Location	chr13:69968445-69968446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BORA-24	chr13:69968333-69968468	NONHSAT034245

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1249772	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1587697	0.83[ASN][1000 genomes]
rs164646	0.84[ASN][1000 genomes]
rs1838808	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1853310	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2484137	0.96[ASN][1000 genomes]
rs2497359	0.84[ASN][1000 genomes]
rs2497360	0.96[ASN][1000 genomes]
rs2497362	0.96[ASN][1000 genomes]
rs2497365	0.83[CHB][hapmap]
rs2593490	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes]
rs2653915	0.81[AFR][1000 genomes]
rs352238	0.85[ASN][1000 genomes]
rs352239	0.85[ASN][1000 genomes]
rs352242	0.85[ASN][1000 genomes]
rs352245	0.83[ASN][1000 genomes]
rs352246	0.84[ASN][1000 genomes]
rs352247	0.84[ASN][1000 genomes]
rs352249	0.84[ASN][1000 genomes]
rs352251	0.84[ASN][1000 genomes]
rs664401	0.84[ASN][1000 genomes]
rs681108	0.84[ASN][1000 genomes]
rs7317328	0.84[ASN][1000 genomes]
rs7325342	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7326647	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7327635	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7336505	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9317797	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9317800	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs949627	0.96[ASN][1000 genomes]
rs9529557	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9541879	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9572151	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9572163	0.86[CHB][hapmap]
rs9599445	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs989143	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900479	chr13:69824819-69984297	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv900480	chr13:69891861-70027794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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