Variant report

Variant	rs1572428
Chromosome Location	chr13:69792681-69792682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69792364..69793914-chr13:69801146..69804044,2	K562	blood:
2	chr13:69788123..69789818-chr13:69791504..69794154,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1249772	0.82[CHB][hapmap]
rs1249774	0.83[JPT][hapmap]
rs1446380	0.82[ASN][1000 genomes]
rs1446384	0.96[CEU][hapmap];0.96[CHB][hapmap];0.88[JPT][hapmap]
rs1446385	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1572427	0.93[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap]
rs2121293	0.85[ASN][1000 genomes]
rs2593490	0.83[CHB][hapmap]
rs34456127	0.83[ASN][1000 genomes]
rs4389038	0.82[ASN][1000 genomes]
rs4884835	0.84[ASN][1000 genomes]
rs58043375	0.83[ASN][1000 genomes]
rs7139612	0.85[ASN][1000 genomes]
rs7358906	0.83[ASN][1000 genomes]
rs921059	0.83[ASN][1000 genomes]
rs9317793	0.82[ASN][1000 genomes]
rs9317797	0.83[ASN][1000 genomes]
rs9541824	0.84[ASN][1000 genomes]
rs9541825	0.84[ASN][1000 genomes]
rs9564544	0.84[ASN][1000 genomes]
rs9564545	0.82[ASN][1000 genomes]
rs9564552	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9572111	0.83[ASN][1000 genomes]
rs9572112	0.84[ASN][1000 genomes]
rs9572113	0.84[ASN][1000 genomes]
rs9572117	0.86[ASN][1000 genomes]
rs9572123	0.87[ASN][1000 genomes]
rs9572127	0.85[ASN][1000 genomes]
rs9572128	0.83[ASN][1000 genomes]
rs9599431	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9599432	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs967685	0.83[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900465	chr13:69568612-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv900473	chr13:69652578-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900478	chr13:69759676-69812252	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv977401	chr13:69782667-69793555	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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