Variant report

Variant	rs4885312
Chromosome Location	chr13:76138044-76138045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76123475..76126296-chr13:76136199..76138617,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118939	Chromatin interaction
ENSG00000261553	Chromatin interaction
ENSG00000188243	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11840945	0.95[ASN][1000 genomes]
rs12866456	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12872149	0.94[ASN][1000 genomes]
rs1323696	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1535726	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274049	0.93[ASN][1000 genomes]
rs2281762	0.90[ASN][1000 genomes]
rs2328961	0.96[ASN][1000 genomes]
rs2328962	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3812844	0.90[ASN][1000 genomes]
rs3812845	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3812846	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4539477	0.80[ASN][1000 genomes]
rs4884008	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885313	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4885314	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4885319	0.97[ASN][1000 genomes]
rs4885321	0.97[ASN][1000 genomes]
rs4885328	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4885330	0.91[ASN][1000 genomes]
rs4885331	0.91[ASN][1000 genomes]
rs4885332	0.91[ASN][1000 genomes]
rs4885333	0.91[ASN][1000 genomes]
rs4885334	0.87[ASN][1000 genomes]
rs61960594	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6562912	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6562920	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7139862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7319441	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7326807	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7331205	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7358977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7491365	0.89[ASN][1000 genomes]
rs7982534	0.91[ASN][1000 genomes]
rs7982613	0.96[ASN][1000 genomes]
rs7984443	0.96[ASN][1000 genomes]
rs7995889	0.85[ASN][1000 genomes]
rs8000062	0.96[ASN][1000 genomes]
rs8192738	0.90[ASN][1000 genomes]
rs8192741	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192746	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8192747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8192748	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8192750	0.80[ASN][1000 genomes]
rs8192751	1.00[ASN][1000 genomes]
rs9318357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9318358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9530450	0.92[ASN][1000 genomes]
rs9530453	0.89[ASN][1000 genomes]
rs9530456	0.90[ASN][1000 genomes]
rs9543980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9543994	0.96[ASN][1000 genomes]
rs9543996	0.95[ASN][1000 genomes]
rs9543997	0.95[ASN][1000 genomes]
rs9543999	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9544008	0.93[ASN][1000 genomes]
rs9565175	1.00[ASN][1000 genomes]
rs9573584	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573590	0.94[ASN][1000 genomes]
rs9635000	0.94[ASN][1000 genomes]
rs966058	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs966059	0.81[AFR][1000 genomes]
rs972542	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs975938	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900563	chr13:76093935-76169347	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv900564	chr13:76100090-76156136	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv900565	chr13:76111280-76169347	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv900566	chr13:76123678-76153748	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv900567	chr13:76123678-76156136	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv900568	chr13:76123678-76159104	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv900569	chr13:76123678-76167433	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv900570	chr13:76123678-76176680	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv900571	chr13:76123678-76207565	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
12	nsv900572	chr13:76130761-76156136	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv900573	chr13:76130761-76159104	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv562347	chr13:76132240-76153415	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv900574	chr13:76132484-76156136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv900575	chr13:76132484-76159104	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv900576	chr13:76132484-76176680	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv900577	chr13:76132484-76207565	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
19	nsv900578	chr13:76136976-76167433	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76124600-76183000	Weak transcription	Small Intestine	intestine
2	chr13:76124800-76146400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:76124800-76146600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:76124800-76146600	Weak transcription	Lung	lung
5	chr13:76124800-76147600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:76124800-76164000	Weak transcription	Spleen	Spleen
7	chr13:76124800-76167600	Weak transcription	Gastric	stomach
8	chr13:76124800-76170600	Weak transcription	Colonic Mucosa	Colon
9	chr13:76125000-76141400	Weak transcription	Fetal Lung	lung
10	chr13:76125000-76143400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr13:76125000-76147600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:76125000-76156200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:76125000-76158000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr13:76125000-76192800	Weak transcription	Brain Substantia Nigra	brain
15	chr13:76125000-76209600	Weak transcription	Right Ventricle	heart
16	chr13:76125200-76141000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr13:76125200-76147200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr13:76125200-76147200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr13:76125200-76147600	Weak transcription	Brain Angular Gyrus	brain
20	chr13:76125200-76173800	Weak transcription	Fetal Heart	heart
21	chr13:76125200-76177800	Weak transcription	Stomach Mucosa	stomach
22	chr13:76125400-76138800	Weak transcription	Fetal Intestine Small	intestine
23	chr13:76125400-76143000	Weak transcription	Brain Hippocampus Middle	brain
24	chr13:76125400-76143000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr13:76125400-76143200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr13:76125400-76147000	Weak transcription	Brain Germinal Matrix	brain
27	chr13:76125400-76147600	Weak transcription	Brain Anterior Caudate	brain
28	chr13:76125400-76191000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr13:76125600-76158000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:76125600-76182000	Weak transcription	Fetal Brain Male	brain
31	chr13:76126600-76140200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr13:76128200-76143800	Weak transcription	NHLF	lung
33	chr13:76129400-76143800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr13:76129400-76145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr13:76129400-76145800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr13:76129400-76147200	Weak transcription	Aorta	Aorta
37	chr13:76129400-76147200	Weak transcription	Left Ventricle	heart
38	chr13:76129400-76147600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr13:76129400-76151400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr13:76129400-76158000	Weak transcription	Fetal Kidney	kidney
41	chr13:76129400-76180400	Weak transcription	Thymus	Thymus
42	chr13:76129600-76141400	Weak transcription	Adipose Nuclei	Adipose
43	chr13:76129600-76141400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr13:76129600-76141400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr13:76129600-76141400	Weak transcription	Fetal Muscle Leg	muscle
46	chr13:76129600-76143600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr13:76129600-76143600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr13:76129600-76144000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr13:76129600-76145000	Weak transcription	HSMMtube	muscle
50	chr13:76129600-76157800	Weak transcription	Fetal Brain Female	brain

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