Variant report

Variant	rs9573584
Chromosome Location	chr13:76128309-76128310
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr13:76127962-76128383	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
COMMD6	TF binding region

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11840945	0.95[ASN][1000 genomes]
rs12866456	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12872149	0.94[ASN][1000 genomes]
rs1323696	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1535726	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031235	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274049	0.93[ASN][1000 genomes]
rs2281762	0.90[ASN][1000 genomes]
rs2328961	0.96[ASN][1000 genomes]
rs2328962	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3812844	0.90[ASN][1000 genomes]
rs3812845	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3812846	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4539477	0.80[ASN][1000 genomes]
rs4884008	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885312	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885313	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4885314	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4885319	0.97[ASN][1000 genomes]
rs4885321	0.97[ASN][1000 genomes]
rs4885328	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4885330	0.91[ASN][1000 genomes]
rs4885331	0.91[ASN][1000 genomes]
rs4885332	0.91[ASN][1000 genomes]
rs4885333	0.91[ASN][1000 genomes]
rs4885334	0.87[ASN][1000 genomes]
rs61960594	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6562912	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6562920	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7139862	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317893	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7319441	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7326807	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7331205	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7358977	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7491365	0.89[ASN][1000 genomes]
rs7982534	0.91[ASN][1000 genomes]
rs7982613	0.96[ASN][1000 genomes]
rs7984443	0.96[ASN][1000 genomes]
rs7995889	0.85[ASN][1000 genomes]
rs8000062	0.96[ASN][1000 genomes]
rs8192738	0.90[ASN][1000 genomes]
rs8192741	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192746	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8192747	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8192748	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8192750	0.80[ASN][1000 genomes]
rs8192751	1.00[ASN][1000 genomes]
rs9318357	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9318358	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9530450	0.92[ASN][1000 genomes]
rs9530453	0.89[ASN][1000 genomes]
rs9530456	0.90[ASN][1000 genomes]
rs9543980	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9543994	0.96[ASN][1000 genomes]
rs9543996	0.95[ASN][1000 genomes]
rs9543997	0.95[ASN][1000 genomes]
rs9543999	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9544008	0.93[ASN][1000 genomes]
rs9565175	1.00[ASN][1000 genomes]
rs9573590	0.94[ASN][1000 genomes]
rs9635000	0.94[ASN][1000 genomes]
rs966058	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs966059	0.80[AFR][1000 genomes]
rs972542	0.97[ASN][1000 genomes]
rs975938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900563	chr13:76093935-76169347	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv900564	chr13:76100090-76156136	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv900565	chr13:76111280-76169347	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv900566	chr13:76123678-76153748	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv900567	chr13:76123678-76156136	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv900568	chr13:76123678-76159104	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv900569	chr13:76123678-76167433	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv900570	chr13:76123678-76176680	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv900571	chr13:76123678-76207565	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76124600-76183000	Weak transcription	Small Intestine	intestine
2	chr13:76124800-76128400	Weak transcription	HSMMtube	muscle
3	chr13:76124800-76128600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:76124800-76129000	Weak transcription	Esophagus	oesophagus
5	chr13:76124800-76129200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:76124800-76130200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:76124800-76130800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:76124800-76135200	Weak transcription	Pancreas	Pancrea
9	chr13:76124800-76146400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:76124800-76146600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:76124800-76146600	Weak transcription	Lung	lung
12	chr13:76124800-76147600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:76124800-76164000	Weak transcription	Spleen	Spleen
14	chr13:76124800-76167600	Weak transcription	Gastric	stomach
15	chr13:76124800-76170600	Weak transcription	Colonic Mucosa	Colon
16	chr13:76125000-76128600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:76125000-76129200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr13:76125000-76129200	Weak transcription	Fetal Stomach	stomach
19	chr13:76125000-76132400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr13:76125000-76141400	Weak transcription	Fetal Lung	lung
21	chr13:76125000-76143400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr13:76125000-76147600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr13:76125000-76156200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr13:76125000-76158000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr13:76125000-76192800	Weak transcription	Brain Substantia Nigra	brain
26	chr13:76125000-76209600	Weak transcription	Right Ventricle	heart
27	chr13:76125200-76128400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr13:76125200-76128600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:76125200-76128600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr13:76125200-76128600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr13:76125200-76128800	Weak transcription	Adipose Nuclei	Adipose
32	chr13:76125200-76130400	Weak transcription	NHDF-Ad	bronchial
33	chr13:76125200-76132400	Weak transcription	A549	lung
34	chr13:76125200-76141000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr13:76125200-76147200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr13:76125200-76147200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr13:76125200-76147600	Weak transcription	Brain Angular Gyrus	brain
38	chr13:76125200-76173800	Weak transcription	Fetal Heart	heart
39	chr13:76125200-76177800	Weak transcription	Stomach Mucosa	stomach
40	chr13:76125400-76128600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr13:76125400-76129000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr13:76125400-76129000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr13:76125400-76129000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr13:76125400-76129200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:76125400-76132400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr13:76125400-76132400	Weak transcription	HUVEC	blood vessel
47	chr13:76125400-76132800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr13:76125400-76136600	Weak transcription	Hela-S3	cervix
49	chr13:76125400-76138800	Weak transcription	Fetal Intestine Small	intestine
50	chr13:76125400-76143000	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links