Variant report

Variant	rs4886581
Chromosome Location	chr15:78999999-79000000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11629637	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11634543	0.83[ASN][1000 genomes]
rs11638490	0.85[ASN][1000 genomes]
rs11639049	0.87[ASN][1000 genomes]
rs11639166	0.87[ASN][1000 genomes]
rs11639181	0.87[ASN][1000 genomes]
rs11639347	0.87[ASN][1000 genomes]
rs11639375	0.87[ASN][1000 genomes]
rs11639382	0.87[ASN][1000 genomes]
rs1825082	0.87[ASN][1000 genomes]
rs1825083	0.87[ASN][1000 genomes]
rs2869554	0.86[ASN][1000 genomes]
rs34225855	0.86[ASN][1000 genomes]
rs34563625	0.87[ASN][1000 genomes]
rs35583595	0.87[ASN][1000 genomes]
rs3784317	0.81[JPT][hapmap]
rs3813564	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3813565	0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4887082	0.83[CHB][hapmap]
rs4887088	0.85[ASN][1000 genomes]
rs4887112	0.80[JPT][hapmap]
rs60191003	0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78988600-79001600	Weak transcription	Pancreas	Pancrea
2	chr15:78998000-79001400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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