Variant report

Variant	rs4887088
Chromosome Location	chr15:79026723-79026724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11629637	0.83[ASN][1000 genomes]
rs11638490	0.80[ASN][1000 genomes]
rs11639049	0.83[ASN][1000 genomes]
rs11639166	0.83[ASN][1000 genomes]
rs11639181	0.83[ASN][1000 genomes]
rs11639347	0.83[ASN][1000 genomes]
rs11639375	0.83[ASN][1000 genomes]
rs11639382	0.83[ASN][1000 genomes]
rs1825082	0.83[ASN][1000 genomes]
rs1825083	0.83[ASN][1000 genomes]
rs2306466	0.81[ASN][1000 genomes]
rs2869554	0.83[ASN][1000 genomes]
rs34225855	0.83[ASN][1000 genomes]
rs34563625	0.83[ASN][1000 genomes]
rs35583595	0.83[ASN][1000 genomes]
rs3813564	0.91[ASN][1000 genomes]
rs3813565	0.83[ASN][1000 genomes]
rs3894347	0.83[ASN][1000 genomes]
rs4886581	0.85[ASN][1000 genomes]
rs4886586	0.91[ASN][1000 genomes]
rs4886587	0.90[ASN][1000 genomes]
rs4887086	0.92[ASN][1000 genomes]
rs60191003	0.89[ASN][1000 genomes]
rs8024463	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79026400-79027400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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