Variant report

Variant	rs11639347
Chromosome Location	chr15:79024350-79024351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1021071	0.86[EUR][1000 genomes]
rs11072785	0.86[EUR][1000 genomes]
rs11072790	0.91[EUR][1000 genomes]
rs11072791	0.93[EUR][1000 genomes]
rs11072792	0.88[EUR][1000 genomes]
rs11629637	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11634543	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11638372	0.89[EUR][1000 genomes]
rs11638490	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11639049	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639166	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639372	0.85[EUR][1000 genomes]
rs11639375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853608	0.81[EUR][1000 genomes]
rs12901913	0.91[EUR][1000 genomes]
rs12902602	0.86[EUR][1000 genomes]
rs12910627	0.92[EUR][1000 genomes]
rs1825082	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1825083	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1825085	0.82[AFR][1000 genomes]
rs1996371	0.80[EUR][1000 genomes]
rs2869554	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2869566	0.93[EUR][1000 genomes]
rs34225855	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34563625	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35583595	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813564	0.91[ASN][1000 genomes]
rs3813565	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3894347	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4886579	0.87[EUR][1000 genomes]
rs4886580	0.87[EUR][1000 genomes]
rs4886581	0.87[ASN][1000 genomes]
rs4886582	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4886583	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4886584	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4886586	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4886587	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4887077	0.91[EUR][1000 genomes]
rs4887086	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4887087	0.93[EUR][1000 genomes]
rs4887088	0.83[ASN][1000 genomes]
rs60191003	0.89[ASN][1000 genomes]
rs6495314	0.83[EUR][1000 genomes]
rs71448817	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72743199	0.90[EUR][1000 genomes]
rs922692	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79023400-79025400	Enhancers	Stomach Smooth Muscle	stomach
2	chr15:79023600-79024600	Enhancers	Rectal Smooth Muscle	rectum
3	chr15:79023800-79024800	Weak transcription	Fetal Stomach	stomach

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