Variant report

Variant	rs2869566
Chromosome Location	chr15:79026496-79026497
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1021071	0.81[EUR][1000 genomes]
rs11072785	0.81[EUR][1000 genomes]
rs11072790	0.86[EUR][1000 genomes]
rs11072791	0.88[EUR][1000 genomes]
rs11072792	0.83[EUR][1000 genomes]
rs11629637	0.90[EUR][1000 genomes]
rs11634543	0.90[EUR][1000 genomes]
rs11638372	0.84[EUR][1000 genomes]
rs11638490	0.87[EUR][1000 genomes]
rs11639049	0.93[EUR][1000 genomes]
rs11639166	0.93[EUR][1000 genomes]
rs11639181	0.93[EUR][1000 genomes]
rs11639347	0.93[EUR][1000 genomes]
rs11639372	0.80[EUR][1000 genomes]
rs11639375	0.93[EUR][1000 genomes]
rs11639382	0.93[EUR][1000 genomes]
rs11853608	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901913	0.86[EUR][1000 genomes]
rs12902602	0.81[EUR][1000 genomes]
rs12909179	0.82[AFR][1000 genomes]
rs12910627	0.87[EUR][1000 genomes]
rs1825082	0.93[EUR][1000 genomes]
rs1825083	0.93[EUR][1000 genomes]
rs2869554	0.85[EUR][1000 genomes]
rs34225855	0.90[EUR][1000 genomes]
rs34563625	0.86[EUR][1000 genomes]
rs35583595	0.90[EUR][1000 genomes]
rs3813565	0.88[EUR][1000 genomes]
rs3894347	0.91[EUR][1000 genomes]
rs4886579	0.82[EUR][1000 genomes]
rs4886580	0.82[EUR][1000 genomes]
rs4886586	0.89[EUR][1000 genomes]
rs4886587	0.98[EUR][1000 genomes]
rs4887077	0.86[EUR][1000 genomes]
rs4887086	0.98[EUR][1000 genomes]
rs4887087	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887090	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs55834964	0.82[AFR][1000 genomes]
rs56195905	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56354501	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71448817	0.82[EUR][1000 genomes]
rs72743199	0.85[EUR][1000 genomes]
rs8031513	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs899984	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs922692	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79026400-79027400	Enhancers	Fetal Stomach	stomach

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