Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:79042680-79042830	NHLF	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78591118..78593802-chr15:79042531..79044066,2	K562	blood:

Variant related genes	Relation type
ENSG00000238166	TF binding region
ENSG00000140395	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11630236	0.83[ASN][1000 genomes]
rs11633351	0.83[ASN][1000 genomes]
rs11853608	0.84[ASN][1000 genomes]
rs12286	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12898323	0.83[ASN][1000 genomes]
rs12898346	0.83[ASN][1000 genomes]
rs12906653	0.83[ASN][1000 genomes]
rs12909179	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12916326	0.83[ASN][1000 genomes]
rs12916648	0.83[ASN][1000 genomes]
rs1809419	0.83[ASN][1000 genomes]
rs1809420	0.83[ASN][1000 genomes]
rs28590060	0.84[AMR][1000 genomes]
rs2869566	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4887087	0.84[ASN][1000 genomes]
rs4887090	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4887095	0.83[ASN][1000 genomes]
rs4887096	0.83[ASN][1000 genomes]
rs55834964	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56195905	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56354501	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7182642	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8031513	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79033000-79045000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:79040400-79043000	Weak transcription	Right Atrium	heart
3	chr15:79040600-79043000	Weak transcription	Esophagus	oesophagus
4	chr15:79040600-79060000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:79042200-79042800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr15:79042200-79043400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:79042400-79042800	Enhancers	Stomach Smooth Muscle	stomach
8	chr15:79042400-79043200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr15:79042400-79043400	Weak transcription	Spleen	Spleen
10	chr15:79042600-79043000	Enhancers	Adipose Nuclei	Adipose
11	chr15:79042600-79043000	Enhancers	Colon Smooth Muscle	Colon
12	chr15:79042600-79043200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:79042600-79043200	Weak transcription	Lung	lung
14	chr15:79042600-79043200	Enhancers	Ovary	ovary

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