Variant report

Variant	rs12286
Chromosome Location	chr15:79051759-79051760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11629637	0.96[CEU][hapmap]
rs11630236	0.91[ASN][1000 genomes]
rs11633351	0.91[ASN][1000 genomes]
rs11638830	0.85[CEU][hapmap]
rs12898323	0.91[ASN][1000 genomes]
rs12898346	0.91[ASN][1000 genomes]
rs12899135	0.85[CEU][hapmap]
rs12900168	0.92[CEU][hapmap]
rs12906653	0.91[ASN][1000 genomes]
rs12907372	0.87[AFR][1000 genomes]
rs12909179	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12910627	0.96[CEU][hapmap]
rs12916326	0.91[ASN][1000 genomes]
rs12916648	0.91[ASN][1000 genomes]
rs1809419	0.91[ASN][1000 genomes]
rs1809420	0.96[CEU][hapmap];0.91[ASN][1000 genomes]
rs1996371	0.85[CEU][hapmap]
rs28590060	0.82[AMR][1000 genomes]
rs3813565	0.92[CEU][hapmap]
rs4887082	0.96[CEU][hapmap]
rs4887090	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887095	0.91[ASN][1000 genomes]
rs4887096	0.91[ASN][1000 genomes]
rs55834964	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56195905	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56354501	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6495267	0.82[ASN][1000 genomes]
rs7171916	0.86[CEU][hapmap]
rs7174367	0.96[CEU][hapmap]
rs7182642	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8031513	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs899984	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79040600-79060000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:79042800-79055400	Enhancers	Right Ventricle	heart
3	chr15:79043600-79077800	Weak transcription	Brain Germinal Matrix	brain
4	chr15:79043800-79052000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:79043800-79053400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:79044000-79052600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:79044200-79059000	Enhancers	Fetal Muscle Trunk	muscle
8	chr15:79045000-79055800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:79045000-79059000	Enhancers	Fetal Muscle Leg	muscle
10	chr15:79046200-79054600	Enhancers	Fetal Heart	heart
11	chr15:79046400-79063200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:79047000-79053200	Enhancers	Stomach Smooth Muscle	stomach
13	chr15:79047200-79053600	Enhancers	NHDF-Ad	bronchial
14	chr15:79047200-79054600	Enhancers	HSMMtube	muscle
15	chr15:79048200-79055200	Enhancers	Primary B cells from cord blood	blood
16	chr15:79048200-79057000	Enhancers	Primary B cells from peripheral blood	blood
17	chr15:79048600-79054600	Enhancers	Placenta	Placenta
18	chr15:79048600-79055000	Enhancers	Left Ventricle	heart
19	chr15:79049200-79053400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr15:79049200-79055200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:79049200-79058600	Enhancers	Spleen	Spleen
22	chr15:79049400-79053400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:79049400-79053600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:79049800-79051800	Strong transcription	Fetal Brain Female	brain
25	chr15:79050000-79051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:79050000-79051800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr15:79050000-79052000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:79050000-79052000	Weak transcription	Gastric	stomach
29	chr15:79050000-79052000	Weak transcription	Stomach Mucosa	stomach
30	chr15:79050000-79052000	Weak transcription	NHLF	lung
31	chr15:79050000-79052600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:79050000-79052600	Enhancers	Brain Substantia Nigra	brain
33	chr15:79050000-79053000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:79050000-79053000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:79050000-79053000	Weak transcription	Fetal Thymus	thymus
36	chr15:79050000-79054000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:79050000-79054400	Enhancers	HSMM	muscle
38	chr15:79050000-79055800	Weak transcription	Esophagus	oesophagus
39	chr15:79050000-79058600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:79050200-79052000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:79050200-79052000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:79050200-79052000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:79050200-79052000	Weak transcription	Lung	lung
44	chr15:79050200-79052000	Weak transcription	Osteobl	bone
45	chr15:79050200-79052600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:79050200-79052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:79050200-79052600	Weak transcription	NH-A	brain
48	chr15:79050200-79053000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr15:79050200-79053200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr15:79050200-79056200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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