Variant report

Variant	rs12910627
Chromosome Location	chr15:78994933-78994934
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78983381..78985912-chr15:78992265..78995147,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1021071	0.90[EUR][1000 genomes]
rs11072785	0.90[EUR][1000 genomes]
rs11072790	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072791	0.98[EUR][1000 genomes]
rs11072792	0.92[EUR][1000 genomes]
rs11629637	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11634543	0.96[EUR][1000 genomes]
rs11638372	0.94[EUR][1000 genomes]
rs11638490	0.88[EUR][1000 genomes]
rs11638830	0.89[CEU][hapmap]
rs11639049	0.92[EUR][1000 genomes]
rs11639166	0.92[EUR][1000 genomes]
rs11639181	0.92[EUR][1000 genomes]
rs11639347	0.92[EUR][1000 genomes]
rs11639372	0.89[EUR][1000 genomes]
rs11639375	0.92[EUR][1000 genomes]
rs11639382	0.92[EUR][1000 genomes]
rs12286	0.96[CEU][hapmap]
rs12899135	0.89[CEU][hapmap]
rs12900168	0.88[CEU][hapmap]
rs12901913	0.95[EUR][1000 genomes]
rs12902602	0.90[EUR][1000 genomes]
rs1809420	0.92[CEU][hapmap]
rs1825082	0.92[EUR][1000 genomes]
rs1825083	0.92[EUR][1000 genomes]
rs1996371	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2869554	0.84[EUR][1000 genomes]
rs2869566	0.87[EUR][1000 genomes]
rs34225855	0.89[EUR][1000 genomes]
rs34563625	0.85[EUR][1000 genomes]
rs35583595	0.89[EUR][1000 genomes]
rs3813565	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs3894347	0.81[EUR][1000 genomes]
rs4886579	0.91[EUR][1000 genomes]
rs4886580	0.91[EUR][1000 genomes]
rs4886587	0.85[EUR][1000 genomes]
rs4887077	0.96[EUR][1000 genomes]
rs4887082	1.00[CEU][hapmap]
rs4887086	0.86[EUR][1000 genomes]
rs4887087	0.87[EUR][1000 genomes]
rs6495314	0.87[EUR][1000 genomes]
rs71448817	0.82[EUR][1000 genomes]
rs7171916	0.82[CEU][hapmap]
rs7174367	0.92[CEU][hapmap]
rs72743199	0.95[EUR][1000 genomes]
rs922692	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974713	chr15:78945824-78996783	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78988600-79001600	Weak transcription	Pancreas	Pancrea
2	chr15:78994400-78996200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:78994800-78995600	Enhancers	Esophagus	oesophagus

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