Variant report

Variant	rs11072791
Chromosome Location	chr15:78997076-78997077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1021071	0.88[EUR][1000 genomes]
rs11072785	0.88[EUR][1000 genomes]
rs11072790	0.97[EUR][1000 genomes]
rs11072792	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629637	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11634543	0.97[EUR][1000 genomes]
rs11638372	0.91[EUR][1000 genomes]
rs11638490	0.89[EUR][1000 genomes]
rs11638830	0.88[CEU][hapmap]
rs11639049	0.93[EUR][1000 genomes]
rs11639166	0.93[EUR][1000 genomes]
rs11639181	0.93[EUR][1000 genomes]
rs11639347	0.93[EUR][1000 genomes]
rs11639372	0.87[EUR][1000 genomes]
rs11639375	0.93[EUR][1000 genomes]
rs11639382	0.93[EUR][1000 genomes]
rs12286	0.96[CEU][hapmap]
rs12899135	0.88[CEU][hapmap]
rs12900168	0.88[CEU][hapmap]
rs12901913	0.93[EUR][1000 genomes]
rs12902602	0.88[EUR][1000 genomes]
rs12910627	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1809420	0.92[CEU][hapmap];0.84[TSI][hapmap]
rs1825082	0.93[EUR][1000 genomes]
rs1825083	0.93[EUR][1000 genomes]
rs1996371	0.88[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs2869554	0.85[EUR][1000 genomes]
rs2869566	0.88[EUR][1000 genomes]
rs34225855	0.90[EUR][1000 genomes]
rs34563625	0.86[EUR][1000 genomes]
rs35583595	0.90[EUR][1000 genomes]
rs3813565	0.96[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs3894347	0.82[EUR][1000 genomes]
rs4886579	0.89[EUR][1000 genomes]
rs4886580	0.89[EUR][1000 genomes]
rs4886587	0.86[EUR][1000 genomes]
rs4887077	0.93[EUR][1000 genomes]
rs4887082	1.00[CEU][hapmap]
rs4887086	0.87[EUR][1000 genomes]
rs4887087	0.88[EUR][1000 genomes]
rs6495314	0.85[EUR][1000 genomes]
rs71448817	0.83[EUR][1000 genomes]
rs7171916	0.81[CEU][hapmap]
rs7174367	0.92[CEU][hapmap];0.82[TSI][hapmap]
rs72743199	0.92[EUR][1000 genomes]
rs922692	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11072791	CHRNA5	cis	cerebellum	SCAN
rs11072791	PSMA4	cis	parietal	SCAN
rs11072791	CHRNA5	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78988600-79001600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links