Variant report
| Variant | rs8031513 |
|---|---|
| Chromosome Location | chr15:79034276-79034277 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11630236 | 0.83[ASN][1000 genomes] |
| rs11633351 | 0.83[ASN][1000 genomes] |
| rs11853608 | 0.81[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12286 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12898323 | 0.83[ASN][1000 genomes] |
| rs12898346 | 0.83[ASN][1000 genomes] |
| rs12906653 | 0.83[ASN][1000 genomes] |
| rs12907372 | 0.91[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs12909179 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs12916326 | 0.83[ASN][1000 genomes] |
| rs12916648 | 0.83[ASN][1000 genomes] |
| rs1809419 | 0.83[ASN][1000 genomes] |
| rs1809420 | 0.83[ASN][1000 genomes] |
| rs2869566 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4886587 | 0.83[EUR][1000 genomes] |
| rs4887086 | 0.83[EUR][1000 genomes] |
| rs4887087 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4887090 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4887095 | 0.83[ASN][1000 genomes] |
| rs4887096 | 0.83[ASN][1000 genomes] |
| rs55834964 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56195905 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56354501 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7182642 | 0.90[AMR][1000 genomes] |
| rs899984 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917303 | chr15:78491050-79205255 | Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 122 gene(s) | inside rSNPs | diseases |
| 2 | nsv974606 | chr15:78996783-79048337 | Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv904431 | chr15:79006442-79155088 | Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:79033000-79045000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr15:79033400-79040400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
