Variant report

Variant	rs55834964
Chromosome Location	chr15:79049766-79049767
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79047462..79049976-chr15:79054585..79057196,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11630236	0.91[ASN][1000 genomes]
rs11633351	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11853608	0.81[AFR][1000 genomes]
rs12286	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12898323	0.91[ASN][1000 genomes]
rs12898346	0.91[ASN][1000 genomes]
rs12906653	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12907372	0.91[AFR][1000 genomes]
rs12909179	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12916326	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12916648	0.91[ASN][1000 genomes]
rs1809419	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1809420	0.91[ASN][1000 genomes]
rs28590060	0.85[AMR][1000 genomes]
rs2869566	0.82[AFR][1000 genomes]
rs4887087	0.82[AFR][1000 genomes]
rs4887090	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887095	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4887096	0.91[ASN][1000 genomes]
rs56195905	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56354501	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6495267	0.82[ASN][1000 genomes]
rs7182642	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8031513	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs899984	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79040600-79060000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:79042800-79055400	Enhancers	Right Ventricle	heart
3	chr15:79043600-79049800	Weak transcription	Fetal Brain Female	brain
4	chr15:79043600-79077800	Weak transcription	Brain Germinal Matrix	brain
5	chr15:79043800-79052000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:79043800-79053400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:79044000-79050000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:79044000-79052600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:79044200-79059000	Enhancers	Fetal Muscle Trunk	muscle
10	chr15:79045000-79055800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:79045000-79059000	Enhancers	Fetal Muscle Leg	muscle
12	chr15:79046200-79054600	Enhancers	Fetal Heart	heart
13	chr15:79046400-79063200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:79046800-79050200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:79047000-79053200	Enhancers	Stomach Smooth Muscle	stomach
16	chr15:79047200-79053600	Enhancers	NHDF-Ad	bronchial
17	chr15:79047200-79054600	Enhancers	HSMMtube	muscle
18	chr15:79048000-79050200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:79048000-79050200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr15:79048000-79050200	Enhancers	HMEC	breast
21	chr15:79048200-79050200	Enhancers	NH-A	brain
22	chr15:79048200-79050400	Enhancers	Adipose Nuclei	Adipose
23	chr15:79048200-79051200	Enhancers	HUVEC	blood vessel
24	chr15:79048200-79055200	Enhancers	Primary B cells from cord blood	blood
25	chr15:79048200-79057000	Enhancers	Primary B cells from peripheral blood	blood
26	chr15:79048400-79050000	Enhancers	Aorta	Aorta
27	chr15:79048400-79050000	Enhancers	Brain Hippocampus Middle	brain
28	chr15:79048600-79050000	Enhancers	Brain Angular Gyrus	brain
29	chr15:79048600-79050200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:79048600-79050200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:79048600-79054600	Enhancers	Placenta	Placenta
32	chr15:79048600-79055000	Enhancers	Left Ventricle	heart
33	chr15:79048800-79051600	Weak transcription	Psoas Muscle	Psoas
34	chr15:79049200-79049800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:79049200-79050000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:79049200-79050000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr15:79049200-79050000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:79049200-79050000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr15:79049200-79050000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:79049200-79050000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:79049200-79050000	ZNF genes & repeats	Fetal Stomach	stomach
42	chr15:79049200-79050000	Enhancers	Fetal Thymus	thymus
43	chr15:79049200-79050000	Enhancers	Rectal Smooth Muscle	rectum
44	chr15:79049200-79050000	Enhancers	Right Atrium	heart
45	chr15:79049200-79050000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr15:79049200-79050000	Enhancers	A549	lung
47	chr15:79049200-79050000	Enhancers	Hela-S3	cervix
48	chr15:79049200-79050000	Flanking Active TSS	HSMM	muscle
49	chr15:79049200-79050000	Enhancers	NHLF	lung
50	chr15:79049200-79050000	Flanking Active TSS	Osteobl	bone

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