Variant report

Variant	rs56195905
Chromosome Location	chr15:79040317-79040318
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:79040208-79040502	K562	blood:	n/a	n/a
2	MYC	chr15:79040184-79040507	K562	blood:	n/a	n/a
3	ZBTB33	chr15:79040070-79040375	GM12878	blood:	n/a	n/a
4	ZBTB33	chr15:79040077-79040417	GM12878	blood:	n/a	n/a
5	ETS1	chr15:79040129-79040351	GM12878	blood:	n/a	n/a
6	ZBTB33	chr15:79040053-79040440	K562	blood:	n/a	n/a
7	ZBTB33	chr15:79039991-79040498	K562	blood:	n/a	n/a
8	MAX	chr15:79040283-79040560	K562	blood:	n/a	n/a
9	CHD2	chr15:79040115-79040485	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000238166	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11630236	0.83[ASN][1000 genomes]
rs11633351	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11853608	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12286	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12898323	0.83[ASN][1000 genomes]
rs12898346	0.83[ASN][1000 genomes]
rs12906653	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12907372	0.91[AFR][1000 genomes]
rs12909179	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12916326	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12916648	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1809419	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1809420	0.83[ASN][1000 genomes]
rs28590060	0.84[AMR][1000 genomes]
rs2869566	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4887087	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4887090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4887095	0.83[ASN][1000 genomes]
rs4887096	0.83[ASN][1000 genomes]
rs55834964	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56354501	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7182642	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8031513	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs899984	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3310945	chr15:79036897-79041395	Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	esv3310944	chr15:79037922-79040770	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv3310946	chr15:79037922-79040770	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3378980	chr15:79038147-79040545	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79033000-79045000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:79033400-79040400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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