Variant report

Variant	rs4887096
Chromosome Location	chr15:79053284-79053285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11630236	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633351	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286	0.91[ASN][1000 genomes]
rs12898323	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12898346	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906653	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916326	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916648	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809419	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809420	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809423	0.86[EUR][1000 genomes]
rs1810165	0.87[EUR][1000 genomes]
rs3894351	0.83[EUR][1000 genomes]
rs3894352	0.82[EUR][1000 genomes]
rs4887090	0.91[ASN][1000 genomes]
rs4887095	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887099	0.83[EUR][1000 genomes]
rs55834964	0.91[ASN][1000 genomes]
rs56195905	0.83[ASN][1000 genomes]
rs56354501	0.83[ASN][1000 genomes]
rs6495267	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7168391	0.85[EUR][1000 genomes]
rs7182642	0.81[EUR][1000 genomes]
rs8031513	0.83[ASN][1000 genomes]
rs8043119	0.81[EUR][1000 genomes]
rs899984	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79040600-79060000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:79042800-79055400	Enhancers	Right Ventricle	heart
3	chr15:79043600-79077800	Weak transcription	Brain Germinal Matrix	brain
4	chr15:79043800-79053400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:79044200-79059000	Enhancers	Fetal Muscle Trunk	muscle
6	chr15:79045000-79055800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:79045000-79059000	Enhancers	Fetal Muscle Leg	muscle
8	chr15:79046200-79054600	Enhancers	Fetal Heart	heart
9	chr15:79046400-79063200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:79047200-79053600	Enhancers	NHDF-Ad	bronchial
11	chr15:79047200-79054600	Enhancers	HSMMtube	muscle
12	chr15:79048200-79055200	Enhancers	Primary B cells from cord blood	blood
13	chr15:79048200-79057000	Enhancers	Primary B cells from peripheral blood	blood
14	chr15:79048600-79054600	Enhancers	Placenta	Placenta
15	chr15:79048600-79055000	Enhancers	Left Ventricle	heart
16	chr15:79049200-79053400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr15:79049200-79055200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:79049200-79058600	Enhancers	Spleen	Spleen
19	chr15:79049400-79053400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:79049400-79053600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:79050000-79054000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:79050000-79054400	Enhancers	HSMM	muscle
23	chr15:79050000-79055800	Weak transcription	Esophagus	oesophagus
24	chr15:79050000-79058600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:79050200-79056200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:79050800-79053800	Enhancers	Brain Anterior Caudate	brain
27	chr15:79051000-79053600	Enhancers	Brain Angular Gyrus	brain
28	chr15:79051000-79053600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr15:79051000-79054800	Enhancers	Primary hematopoietic stem cells	blood
30	chr15:79051000-79054800	Enhancers	Adipose Nuclei	Adipose
31	chr15:79051200-79053600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:79051600-79053600	Enhancers	Brain Hippocampus Middle	brain
33	chr15:79051600-79054600	Enhancers	Fetal Lung	lung
34	chr15:79051600-79055000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr15:79051800-79053800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:79051800-79053800	Enhancers	Fetal Stomach	stomach
37	chr15:79051800-79054600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr15:79051800-79054600	Enhancers	GM12878-XiMat	blood
39	chr15:79051800-79070600	Weak transcription	Fetal Brain Female	brain
40	chr15:79052000-79053400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr15:79052000-79054200	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr15:79052000-79054600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:79052000-79054800	Enhancers	HUVEC	blood vessel
44	chr15:79052200-79053600	Weak transcription	Fetal Intestine Small	intestine
45	chr15:79052400-79053400	Weak transcription	Lung	lung
46	chr15:79052400-79053400	Weak transcription	Right Atrium	heart
47	chr15:79052400-79053400	Weak transcription	Thymus	Thymus
48	chr15:79052600-79053600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr15:79052600-79053600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr15:79052600-79053600	Weak transcription	Stomach Mucosa	stomach

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