Variant report

Variant	rs4886717
Chromosome Location	chr15:74165128-74165129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11072447	1.00[CHD][hapmap]
rs11636136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11639300	1.00[CHD][hapmap]
rs12902040	1.00[CHB][hapmap]
rs4272992	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.90[YRI][hapmap];0.94[ASN][1000 genomes]
rs4445847	0.83[MEX][hapmap]
rs4886721	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7163502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3496464	chr15:74163499-74165397	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4886717	SPESP1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74163600-74165200	Enhancers	Osteobl	bone
3	chr15:74163600-74165600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:74164400-74165200	Enhancers	NHDF-Ad	bronchial
5	chr15:74164600-74165200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:74164600-74165200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:74164600-74167800	Weak transcription	Fetal Intestine Large	intestine
8	chr15:74164800-74165400	Weak transcription	Pancreas	Pancrea
9	chr15:74164800-74165800	Weak transcription	Left Ventricle	heart
10	chr15:74165000-74165200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:74165000-74165200	Bivalent Enhancer	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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