Variant report

Variant	rs7163502
Chromosome Location	chr15:74164031-74164032
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11072447	1.00[CHD][hapmap]
rs11636136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11639300	1.00[CHD][hapmap]
rs12902040	1.00[CHB][hapmap]
rs4272992	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4886717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886721	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3487225	chr15:74163341-74164459	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3487226	chr15:74163341-74164459	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3496464	chr15:74163499-74165397	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2080287	chr15:74164013-74164575	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74158600-74164600	Enhancers	Right Atrium	heart
3	chr15:74161600-74164600	Enhancers	Right Ventricle	heart
4	chr15:74162600-74164600	Enhancers	Fetal Intestine Large	intestine
5	chr15:74162600-74164800	Enhancers	Fetal Intestine Small	intestine
6	chr15:74163000-74164600	Enhancers	Stomach Mucosa	stomach
7	chr15:74163000-74164600	Enhancers	Thymus	Thymus
8	chr15:74163200-74164400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr15:74163200-74164400	Enhancers	Fetal Heart	heart
10	chr15:74163200-74164800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:74163400-74164400	Enhancers	Primary hematopoietic stem cells	blood
12	chr15:74163600-74164600	Enhancers	Duodenum Mucosa	Duodenum
13	chr15:74163600-74164800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:74163600-74165200	Enhancers	Osteobl	bone
15	chr15:74163600-74165600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:74163800-74164600	Weak transcription	Left Ventricle	heart
17	chr15:74163800-74164600	Weak transcription	Pancreas	Pancrea
18	chr15:74163800-74164800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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