Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74176824..74179799-chr15:74328543..74330066,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11632590	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11636136	1.00[CHB][hapmap]
rs11639394	0.82[ASN][1000 genomes]
rs11855322	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12906932	0.82[ASN][1000 genomes]
rs12914489	1.00[ASN][1000 genomes]
rs1452378	1.00[CEU][hapmap]
rs2123209	0.90[ASN][1000 genomes]
rs34432278	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35192808	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35196094	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35697698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35737351	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4272992	1.00[CHB][hapmap]
rs4886717	1.00[CHB][hapmap]
rs55736920	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55841941	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56047016	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67962220	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163502	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12902040	FEM1B	cis	parietal	SCAN
rs12902040	TBC1D21	cis	cerebellum	SCAN
rs12902040	PML	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74175600-74183800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:74176800-74177000	Flanking Active TSS	Duodenum Mucosa	Duodenum

Quick Search: