Variant report

Variant	rs35697698
Chromosome Location	chr15:74177250-74177251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11632590	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11639394	0.82[ASN][1000 genomes]
rs11855322	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12902040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906932	0.82[ASN][1000 genomes]
rs12914489	1.00[ASN][1000 genomes]
rs2123209	0.90[ASN][1000 genomes]
rs34432278	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35192808	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35196094	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35737351	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55736920	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55841941	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56047016	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67962220	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74175600-74183800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links