Variant report

Variant	rs35737351
Chromosome Location	chr15:74192006-74192007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74191360..74193301-chr15:74195249..74198218,2	MCF-7	breast:
2	chr15:74190385..74192621-chr15:74220750..74222967,2	MCF-7	breast:
3	chr15:74189981..74192337-chr15:74200765..74203588,2	MCF-7	breast:
4	chr15:74185254..74189144-chr15:74189847..74193524,3	K562	blood:
5	chr15:74191166..74196987-chr15:74197125..74201109,6	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11855322	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902040	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34432278	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34641928	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35196094	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35697698	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4886470	0.82[ASN][1000 genomes]
rs55736920	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56116666	1.00[ASN][1000 genomes]
rs62004865	1.00[ASN][1000 genomes]
rs67962220	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74187200-74192600	Weak transcription	Spleen	Spleen
2	chr15:74188800-74204000	Weak transcription	Right Atrium	heart
3	chr15:74189000-74193200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:74189000-74193800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:74189200-74193000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:74189200-74193200	Enhancers	HSMMtube	muscle
7	chr15:74189400-74193200	Enhancers	NH-A	brain
8	chr15:74190000-74203400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:74190600-74192200	Weak transcription	Esophagus	oesophagus
10	chr15:74190600-74192800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr15:74190600-74193000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:74190600-74194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:74190800-74192400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:74190800-74192400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:74190800-74192400	Weak transcription	Placenta	Placenta
16	chr15:74191400-74192600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:74191400-74192800	Enhancers	Brain Germinal Matrix	brain
18	chr15:74191400-74192800	Enhancers	Stomach Smooth Muscle	stomach
19	chr15:74191400-74193000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:74191400-74193000	Enhancers	HSMM	muscle
21	chr15:74191400-74193000	Enhancers	Osteobl	bone
22	chr15:74191600-74192200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:74191600-74192200	Enhancers	Aorta	Aorta
24	chr15:74191600-74192600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:74191600-74192600	Enhancers	Fetal Brain Male	brain
26	chr15:74191600-74193000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr15:74191600-74193000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr15:74191600-74193400	Enhancers	Fetal Brain Female	brain
29	chr15:74191600-74194600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:74191800-74192600	Enhancers	Fetal Muscle Leg	muscle
31	chr15:74191800-74192600	Bivalent Enhancer	Fetal Stomach	stomach
32	chr15:74191800-74193000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:74191800-74194400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:74191800-74203600	Weak transcription	Primary T cells from cord blood	blood
35	chr15:74192000-74192400	Enhancers	NHDF-Ad	bronchial

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