Variant report

Variant	rs56116666
Chromosome Location	chr15:74213151-74213152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr15:74212895-74213360	K562	blood:	n/a	n/a
2	ELF1	chr15:74212868-74213153	K562	blood:	n/a	n/a
3	EP300	chr15:74212878-74213152	K562	blood:	n/a	n/a
4	STAT3	chr15:74212886-74213171	MCF10A-Er-Src	breast:	n/a	chr15:74213015-74213026
5	STAT3	chr15:74212881-74213170	MCF10A-Er-Src	breast:	n/a	chr15:74213015-74213026
6	ESRRA	chr15:74212576-74213314	GM12878	blood:	n/a	n/a
7	PBX3	chr15:74213005-74213163	GM12878	blood:	n/a	n/a
8	CEBPB	chr15:74212981-74213168	K562	blood:	n/a	n/a
9	JUND	chr15:74212942-74213164	K562	blood:	n/a	n/a
10	STAT3	chr15:74212852-74213173	MCF10A-Er-Src	breast:	n/a	chr15:74213015-74213026
11	CEBPB	chr15:74212977-74213198	K562	blood:	n/a	n/a
12	ATF1	chr15:74212892-74213160	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74212371..74214776-chr15:74230119..74231737,2	K562	blood:

Variant related genes	Relation type
LOXL1-AS1	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11855322	1.00[ASN][1000 genomes]
rs34432278	1.00[ASN][1000 genomes]
rs34641928	0.82[ASN][1000 genomes]
rs35196094	1.00[ASN][1000 genomes]
rs35737351	1.00[ASN][1000 genomes]
rs4886470	0.82[ASN][1000 genomes]
rs55736920	1.00[ASN][1000 genomes]
rs56062631	0.95[EUR][1000 genomes]
rs62004865	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:74198200-74215200	Weak transcription	Pancreas	Pancrea
3	chr15:74199200-74216200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:74199800-74213800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:74203600-74213800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:74204000-74214000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:74206800-74213400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:74207000-74213600	Weak transcription	Left Ventricle	heart
9	chr15:74207000-74214200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:74208000-74214600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:74208800-74213600	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:74208800-74215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:74208800-74215400	Weak transcription	Esophagus	oesophagus
14	chr15:74208800-74215600	Weak transcription	Hela-S3	cervix
15	chr15:74209600-74215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:74210000-74214400	Weak transcription	HSMMtube	muscle
17	chr15:74210600-74214200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:74210800-74213600	Weak transcription	NHDF-Ad	bronchial
19	chr15:74211200-74213600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:74211200-74214000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:74211200-74216200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr15:74211400-74213600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:74211400-74214000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:74211600-74213600	Weak transcription	NH-A	brain
25	chr15:74211600-74213600	Weak transcription	Osteobl	bone
26	chr15:74211600-74213800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:74211600-74214000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr15:74211600-74214600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:74211800-74213400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:74211800-74215400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr15:74211800-74218400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:74212000-74213400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr15:74212000-74213800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:74212000-74214400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:74212000-74214600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:74212000-74215000	Enhancers	Primary T cells fromperipheralblood	blood
37	chr15:74212000-74215400	Enhancers	Placenta	Placenta
38	chr15:74212000-74215600	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr15:74212000-74217200	Enhancers	Right Atrium	heart
40	chr15:74212000-74218400	Enhancers	Adipose Nuclei	Adipose
41	chr15:74212200-74214000	Enhancers	Stomach Smooth Muscle	stomach
42	chr15:74212200-74214600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:74212200-74216200	Weak transcription	Primary T cells from cord blood	blood
44	chr15:74212200-74217000	Enhancers	Primary hematopoietic stem cells	blood
45	chr15:74212200-74218600	Enhancers	Fetal Heart	heart
46	chr15:74212400-74213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:74212400-74213400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:74212400-74213400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:74212400-74213600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr15:74212400-74213600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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