Variant report

Variant	rs55736920
Chromosome Location	chr15:74195014-74195015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11855322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902040	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34432278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34641928	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35196094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35697698	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35737351	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886470	0.82[ASN][1000 genomes]
rs56116666	1.00[ASN][1000 genomes]
rs62004865	1.00[ASN][1000 genomes]
rs67962220	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74188800-74204000	Weak transcription	Right Atrium	heart
2	chr15:74190000-74203400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:74191800-74203600	Weak transcription	Primary T cells from cord blood	blood
4	chr15:74192200-74203400	Weak transcription	Aorta	Aorta
5	chr15:74192600-74196800	Weak transcription	Fetal Brain Male	brain
6	chr15:74192600-74207400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:74193000-74198800	Weak transcription	HSMM	muscle
9	chr15:74193200-74198600	Weak transcription	HSMMtube	muscle
10	chr15:74193400-74200600	Weak transcription	Fetal Brain Female	brain
11	chr15:74194600-74195400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:74194600-74195400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:74194800-74195200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:74194800-74195600	Enhancers	NHDF-Ad	bronchial
15	chr15:74194800-74195800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr15:74195000-74195200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:74195000-74195200	Enhancers	Brain Germinal Matrix	brain
18	chr15:74195000-74195400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr15:74195000-74195800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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